Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22180 and PS417_22185 are separated by 139 nucleotides PS417_22185 and PS417_22190 are separated by 207 nucleotides PS417_22190 and PS417_22195 are separated by 127 nucleotides
PS417_22180: PS417_22180 - superoxide dismutase, at 4,804,521 to 4,805,117
_22180
PS417_22185: PS417_22185 - hypothetical protein, at 4,805,257 to 4,805,442
_22185
PS417_22190: PS417_22190 - diguanylate cyclase, at 4,805,650 to 4,807,701
_22190
PS417_22195: PS417_22195 - peptidase, at 4,807,829 to 4,809,172
_22195
Position (kb) 4805
4806
4807
4808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4805.116 kb on - strand at 4805.415 kb on + strand, within PS417_22185 at 4805.483 kb on + strand at 4805.484 kb on - strand at 4805.522 kb on - strand at 4805.614 kb on - strand at 4805.761 kb on + strand at 4806.056 kb on - strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.095 kb on - strand, within PS417_22190 at 4806.175 kb on + strand, within PS417_22190 at 4806.175 kb on + strand, within PS417_22190 at 4806.175 kb on + strand, within PS417_22190 at 4806.176 kb on - strand, within PS417_22190 at 4806.185 kb on - strand, within PS417_22190 at 4806.264 kb on + strand, within PS417_22190 at 4806.264 kb on + strand, within PS417_22190 at 4806.264 kb on + strand, within PS417_22190 at 4806.265 kb on - strand, within PS417_22190 at 4806.265 kb on - strand, within PS417_22190 at 4806.354 kb on + strand, within PS417_22190 at 4806.880 kb on + strand, within PS417_22190 at 4806.881 kb on - strand, within PS417_22190 at 4806.974 kb on - strand, within PS417_22190 at 4807.320 kb on + strand at 4807.524 kb on + strand at 4807.582 kb on + strand at 4807.583 kb on - strand at 4807.583 kb on - strand at 4807.583 kb on - strand at 4807.583 kb on - strand at 4807.624 kb on + strand at 4807.734 kb on - strand at 4807.837 kb on + strand at 4807.838 kb on - strand at 4808.163 kb on - strand, within PS417_22195 at 4808.163 kb on - strand, within PS417_22195 at 4808.312 kb on - strand, within PS417_22195 at 4808.513 kb on + strand, within PS417_22195 at 4808.646 kb on - strand, within PS417_22195
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,805,116 - +0.5 4,805,415 + PS417_22185 0.85 -0.0 4,805,483 + +0.3 4,805,484 - -0.8 4,805,522 - -0.3 4,805,614 - -2.2 4,805,761 + -2.2 4,806,056 - PS417_22190 0.20 -2.9 4,806,094 + PS417_22190 0.22 -1.6 4,806,094 + PS417_22190 0.22 -0.4 4,806,094 + PS417_22190 0.22 -3.6 4,806,095 - PS417_22190 0.22 -0.8 4,806,175 + PS417_22190 0.26 -1.1 4,806,175 + PS417_22190 0.26 -0.2 4,806,175 + PS417_22190 0.26 -0.6 4,806,176 - PS417_22190 0.26 -1.6 4,806,185 - PS417_22190 0.26 -2.6 4,806,264 + PS417_22190 0.30 -1.4 4,806,264 + PS417_22190 0.30 -2.0 4,806,264 + PS417_22190 0.30 -1.0 4,806,265 - PS417_22190 0.30 +0.1 4,806,265 - PS417_22190 0.30 -0.4 4,806,354 + PS417_22190 0.34 +1.2 4,806,880 + PS417_22190 0.60 -1.0 4,806,881 - PS417_22190 0.60 -2.2 4,806,974 - PS417_22190 0.65 -3.1 4,807,320 + -0.8 4,807,524 + -1.8 4,807,582 + -0.2 4,807,583 - -1.8 4,807,583 - +2.0 4,807,583 - -2.5 4,807,583 - -1.9 4,807,624 + -1.0 4,807,734 - -1.8 4,807,837 + +2.6 4,807,838 - -1.0 4,808,163 - PS417_22195 0.25 -2.8 4,808,163 - PS417_22195 0.25 -0.5 4,808,312 - PS417_22195 0.36 -0.9 4,808,513 + PS417_22195 0.51 -0.5 4,808,646 - PS417_22195 0.61 +0.4
Or see this region's nucleotide sequence