Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02000 and PS417_02005 are separated by 32 nucleotides PS417_02005 and PS417_02010 are separated by 263 nucleotides
PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878
_02000
PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329
_02005
PS417_02010: PS417_02010 - uroporphyrinogen decarboxylase, at 449,593 to 450,660
_02010
Position (kb) 447
448
449
450 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 447.141 kb on - strand, within PS417_02000 at 447.297 kb on + strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.381 kb on + strand, within PS417_02000 at 447.423 kb on + strand, within PS417_02000 at 447.537 kb on + strand at 447.615 kb on + strand at 447.616 kb on - strand at 447.739 kb on - strand at 447.796 kb on - strand at 447.796 kb on - strand at 447.908 kb on - strand at 447.908 kb on - strand at 447.929 kb on - strand at 448.013 kb on + strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.293 kb on - strand, within PS417_02005 at 448.512 kb on + strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.643 kb on + strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.649 kb on + strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.691 kb on + strand, within PS417_02005 at 448.692 kb on - strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.947 kb on - strand, within PS417_02005 at 449.397 kb on + strand at 449.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 447,141 - PS417_02000 0.83 -6.7 447,297 + PS417_02000 0.87 -4.1 447,298 - PS417_02000 0.87 -2.5 447,298 - PS417_02000 0.87 -2.8 447,381 + PS417_02000 0.89 -1.1 447,423 + PS417_02000 0.90 -5.2 447,537 + -3.8 447,615 + -0.4 447,616 - -4.4 447,739 - +0.0 447,796 - -1.4 447,796 - -0.7 447,908 - -5.7 447,908 - -7.1 447,929 - -2.0 448,013 + -1.5 448,014 - -1.0 448,014 - -3.6 448,014 - -5.0 448,292 + PS417_02005 0.27 -5.5 448,292 + PS417_02005 0.27 -3.4 448,292 + PS417_02005 0.27 -5.5 448,292 + PS417_02005 0.27 -4.4 448,292 + PS417_02005 0.27 -3.7 448,292 + PS417_02005 0.27 -4.8 448,292 + PS417_02005 0.27 -3.6 448,293 - PS417_02005 0.27 -2.5 448,512 + PS417_02005 0.42 -3.5 448,614 - PS417_02005 0.50 -6.0 448,614 - PS417_02005 0.50 -6.0 448,643 + PS417_02005 0.52 -3.2 448,644 - PS417_02005 0.52 -4.5 448,644 - PS417_02005 0.52 -4.6 448,644 - PS417_02005 0.52 -1.4 448,644 - PS417_02005 0.52 -3.4 448,649 + PS417_02005 0.52 -5.1 448,650 - PS417_02005 0.52 -3.6 448,650 - PS417_02005 0.52 -3.5 448,691 + PS417_02005 0.55 -4.3 448,692 - PS417_02005 0.55 -2.8 448,946 + PS417_02005 0.73 -5.8 448,946 + PS417_02005 0.73 -2.6 448,947 - PS417_02005 0.73 -2.4 449,397 + +0.1 449,398 - +1.5
Or see this region's nucleotide sequence