Strain Fitness in Pseudomonas simiae WCS417 around PS417_17210

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17205 and PS417_17210 are separated by 119 nucleotidesPS417_17210 and PS417_17215 are separated by 570 nucleotides PS417_17205: PS417_17205 - LysR family transcriptional regulator, at 3,757,430 to 3,758,329 _17205 PS417_17210: PS417_17210 - MFS transporter, at 3,758,449 to 3,759,654 _17210 PS417_17215: PS417_17215 - peptidylprolyl isomerase, at 3,760,225 to 3,762,099 _17215 Position (kb) 3758 3759 3760Strain fitness (log2 ratio) -2 -1 0 1at 3757.468 kb on + strandat 3757.468 kb on + strandat 3757.468 kb on + strandat 3757.469 kb on - strandat 3757.469 kb on - strandat 3757.552 kb on - strand, within PS417_17205at 3757.552 kb on - strand, within PS417_17205at 3757.603 kb on + strand, within PS417_17205at 3757.604 kb on - strand, within PS417_17205at 3757.604 kb on - strand, within PS417_17205at 3757.604 kb on - strand, within PS417_17205at 3757.605 kb on + strand, within PS417_17205at 3757.605 kb on + strand, within PS417_17205at 3757.605 kb on + strand, within PS417_17205at 3757.605 kb on + strand, within PS417_17205at 3757.606 kb on - strand, within PS417_17205at 3757.606 kb on - strand, within PS417_17205at 3757.834 kb on + strand, within PS417_17205at 3758.424 kb on + strandat 3758.511 kb on - strandat 3758.601 kb on - strand, within PS417_17210at 3758.613 kb on - strand, within PS417_17210at 3758.636 kb on - strand, within PS417_17210at 3758.636 kb on - strand, within PS417_17210at 3758.715 kb on - strand, within PS417_17210at 3758.927 kb on + strand, within PS417_17210at 3759.005 kb on + strand, within PS417_17210at 3759.006 kb on - strand, within PS417_17210at 3759.123 kb on + strand, within PS417_17210at 3759.124 kb on - strand, within PS417_17210at 3759.127 kb on + strand, within PS417_17210at 3759.127 kb on + strand, within PS417_17210at 3759.127 kb on + strand, within PS417_17210at 3759.127 kb on + strand, within PS417_17210at 3759.127 kb on + strand, within PS417_17210at 3759.128 kb on - strand, within PS417_17210at 3759.128 kb on - strand, within PS417_17210at 3759.128 kb on - strand, within PS417_17210at 3759.128 kb on - strand, within PS417_17210at 3759.131 kb on + strand, within PS417_17210at 3759.131 kb on + strand, within PS417_17210at 3759.132 kb on - strand, within PS417_17210at 3759.132 kb on - strand, within PS417_17210at 3759.132 kb on - strand, within PS417_17210at 3759.152 kb on - strand, within PS417_17210at 3759.157 kb on + strand, within PS417_17210at 3759.157 kb on + strand, within PS417_17210at 3759.158 kb on - strand, within PS417_17210at 3759.364 kb on + strand, within PS417_17210at 3759.365 kb on - strand, within PS417_17210at 3759.404 kb on + strand, within PS417_17210at 3759.404 kb on + strand, within PS417_17210at 3759.569 kb on + strandat 3759.569 kb on + strandat 3759.570 kb on - strandat 3759.570 kb on - strandat 3759.570 kb on - strandat 3759.657 kb on + strandat 3759.714 kb on - strandat 3759.833 kb on + strandat 3759.834 kb on - strandat 3759.834 kb on - strandat 3760.025 kb on - strandat 3760.025 kb on - strandat 3760.119 kb on + strandat 3760.119 kb on + strandat 3760.120 kb on - strandat 3760.120 kb on - strandat 3760.154 kb on + strandat 3760.165 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,757,468 + +0.5
3,757,468 + +0.1
3,757,468 + +0.4
3,757,469 - -0.1
3,757,469 - -0.6
3,757,552 - PS417_17205 0.14 -0.4
3,757,552 - PS417_17205 0.14 +1.2
3,757,603 + PS417_17205 0.19 -0.4
3,757,604 - PS417_17205 0.19 -0.0
3,757,604 - PS417_17205 0.19 +0.5
3,757,604 - PS417_17205 0.19 +0.2
3,757,605 + PS417_17205 0.19 +0.7
3,757,605 + PS417_17205 0.19 +0.0
3,757,605 + PS417_17205 0.19 -0.1
3,757,605 + PS417_17205 0.19 -0.5
3,757,606 - PS417_17205 0.20 -0.7
3,757,606 - PS417_17205 0.20 +0.2
3,757,834 + PS417_17205 0.45 +1.5
3,758,424 + +0.2
3,758,511 - +0.6
3,758,601 - PS417_17210 0.13 -0.6
3,758,613 - PS417_17210 0.14 +0.8
3,758,636 - PS417_17210 0.16 -0.1
3,758,636 - PS417_17210 0.16 -0.3
3,758,715 - PS417_17210 0.22 -0.9
3,758,927 + PS417_17210 0.40 +1.5
3,759,005 + PS417_17210 0.46 -0.1
3,759,006 - PS417_17210 0.46 -0.6
3,759,123 + PS417_17210 0.56 -1.2
3,759,124 - PS417_17210 0.56 -0.2
3,759,127 + PS417_17210 0.56 -0.2
3,759,127 + PS417_17210 0.56 -1.7
3,759,127 + PS417_17210 0.56 -0.4
3,759,127 + PS417_17210 0.56 -1.2
3,759,127 + PS417_17210 0.56 +0.2
3,759,128 - PS417_17210 0.56 -1.2
3,759,128 - PS417_17210 0.56 -0.2
3,759,128 - PS417_17210 0.56 -1.2
3,759,128 - PS417_17210 0.56 -0.7
3,759,131 + PS417_17210 0.57 -0.0
3,759,131 + PS417_17210 0.57 +0.9
3,759,132 - PS417_17210 0.57 +0.5
3,759,132 - PS417_17210 0.57 +0.1
3,759,132 - PS417_17210 0.57 -0.7
3,759,152 - PS417_17210 0.58 +0.4
3,759,157 + PS417_17210 0.59 +1.5
3,759,157 + PS417_17210 0.59 -0.1
3,759,158 - PS417_17210 0.59 -0.3
3,759,364 + PS417_17210 0.76 -0.3
3,759,365 - PS417_17210 0.76 +0.6
3,759,404 + PS417_17210 0.79 -0.3
3,759,404 + PS417_17210 0.79 -0.0
3,759,569 + -1.3
3,759,569 + +0.0
3,759,570 - -0.3
3,759,570 - +0.0
3,759,570 - -2.5
3,759,657 + +1.2
3,759,714 - -0.6
3,759,833 + -0.1
3,759,834 - +0.4
3,759,834 - -1.3
3,760,025 - +0.3
3,760,025 - +0.9
3,760,119 + -0.5
3,760,119 + -0.2
3,760,120 - -1.3
3,760,120 - +0.4
3,760,154 + -2.4
3,760,165 + -2.6

Or see this region's nucleotide sequence