Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17205 and PS417_17210 are separated by 119 nucleotides PS417_17210 and PS417_17215 are separated by 570 nucleotides
PS417_17205: PS417_17205 - LysR family transcriptional regulator, at 3,757,430 to 3,758,329
_17205
PS417_17210: PS417_17210 - MFS transporter, at 3,758,449 to 3,759,654
_17210
PS417_17215: PS417_17215 - peptidylprolyl isomerase, at 3,760,225 to 3,762,099
_17215
Position (kb)
3758
3759
3760 Strain fitness (log2 ratio)
-2
-1
0
1 at 3757.468 kb on + strand at 3757.468 kb on + strand at 3757.468 kb on + strand at 3757.469 kb on - strand at 3757.469 kb on - strand at 3757.552 kb on - strand, within PS417_17205 at 3757.552 kb on - strand, within PS417_17205 at 3757.603 kb on + strand, within PS417_17205 at 3757.604 kb on - strand, within PS417_17205 at 3757.604 kb on - strand, within PS417_17205 at 3757.604 kb on - strand, within PS417_17205 at 3757.605 kb on + strand, within PS417_17205 at 3757.605 kb on + strand, within PS417_17205 at 3757.605 kb on + strand, within PS417_17205 at 3757.605 kb on + strand, within PS417_17205 at 3757.606 kb on - strand, within PS417_17205 at 3757.606 kb on - strand, within PS417_17205 at 3757.834 kb on + strand, within PS417_17205 at 3758.424 kb on + strand at 3758.511 kb on - strand at 3758.601 kb on - strand, within PS417_17210 at 3758.613 kb on - strand, within PS417_17210 at 3758.636 kb on - strand, within PS417_17210 at 3758.636 kb on - strand, within PS417_17210 at 3758.715 kb on - strand, within PS417_17210 at 3758.927 kb on + strand, within PS417_17210 at 3759.005 kb on + strand, within PS417_17210 at 3759.006 kb on - strand, within PS417_17210 at 3759.123 kb on + strand, within PS417_17210 at 3759.124 kb on - strand, within PS417_17210 at 3759.127 kb on + strand, within PS417_17210 at 3759.127 kb on + strand, within PS417_17210 at 3759.127 kb on + strand, within PS417_17210 at 3759.127 kb on + strand, within PS417_17210 at 3759.127 kb on + strand, within PS417_17210 at 3759.128 kb on - strand, within PS417_17210 at 3759.128 kb on - strand, within PS417_17210 at 3759.128 kb on - strand, within PS417_17210 at 3759.128 kb on - strand, within PS417_17210 at 3759.131 kb on + strand, within PS417_17210 at 3759.131 kb on + strand, within PS417_17210 at 3759.132 kb on - strand, within PS417_17210 at 3759.132 kb on - strand, within PS417_17210 at 3759.132 kb on - strand, within PS417_17210 at 3759.152 kb on - strand, within PS417_17210 at 3759.157 kb on + strand, within PS417_17210 at 3759.157 kb on + strand, within PS417_17210 at 3759.158 kb on - strand, within PS417_17210 at 3759.364 kb on + strand, within PS417_17210 at 3759.365 kb on - strand, within PS417_17210 at 3759.404 kb on + strand, within PS417_17210 at 3759.404 kb on + strand, within PS417_17210 at 3759.569 kb on + strand at 3759.569 kb on + strand at 3759.570 kb on - strand at 3759.570 kb on - strand at 3759.570 kb on - strand at 3759.657 kb on + strand at 3759.714 kb on - strand at 3759.833 kb on + strand at 3759.834 kb on - strand at 3759.834 kb on - strand at 3760.025 kb on - strand at 3760.025 kb on - strand at 3760.119 kb on + strand at 3760.119 kb on + strand at 3760.120 kb on - strand at 3760.120 kb on - strand at 3760.154 kb on + strand at 3760.165 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,757,468 + +0.5 3,757,468 + +0.1 3,757,468 + +0.4 3,757,469 - -0.1 3,757,469 - -0.6 3,757,552 - PS417_17205 0.14 -0.4 3,757,552 - PS417_17205 0.14 +1.2 3,757,603 + PS417_17205 0.19 -0.4 3,757,604 - PS417_17205 0.19 -0.0 3,757,604 - PS417_17205 0.19 +0.5 3,757,604 - PS417_17205 0.19 +0.2 3,757,605 + PS417_17205 0.19 +0.7 3,757,605 + PS417_17205 0.19 +0.0 3,757,605 + PS417_17205 0.19 -0.1 3,757,605 + PS417_17205 0.19 -0.5 3,757,606 - PS417_17205 0.20 -0.7 3,757,606 - PS417_17205 0.20 +0.2 3,757,834 + PS417_17205 0.45 +1.5 3,758,424 + +0.2 3,758,511 - +0.6 3,758,601 - PS417_17210 0.13 -0.6 3,758,613 - PS417_17210 0.14 +0.8 3,758,636 - PS417_17210 0.16 -0.1 3,758,636 - PS417_17210 0.16 -0.3 3,758,715 - PS417_17210 0.22 -0.9 3,758,927 + PS417_17210 0.40 +1.5 3,759,005 + PS417_17210 0.46 -0.1 3,759,006 - PS417_17210 0.46 -0.6 3,759,123 + PS417_17210 0.56 -1.2 3,759,124 - PS417_17210 0.56 -0.2 3,759,127 + PS417_17210 0.56 -0.2 3,759,127 + PS417_17210 0.56 -1.7 3,759,127 + PS417_17210 0.56 -0.4 3,759,127 + PS417_17210 0.56 -1.2 3,759,127 + PS417_17210 0.56 +0.2 3,759,128 - PS417_17210 0.56 -1.2 3,759,128 - PS417_17210 0.56 -0.2 3,759,128 - PS417_17210 0.56 -1.2 3,759,128 - PS417_17210 0.56 -0.7 3,759,131 + PS417_17210 0.57 -0.0 3,759,131 + PS417_17210 0.57 +0.9 3,759,132 - PS417_17210 0.57 +0.5 3,759,132 - PS417_17210 0.57 +0.1 3,759,132 - PS417_17210 0.57 -0.7 3,759,152 - PS417_17210 0.58 +0.4 3,759,157 + PS417_17210 0.59 +1.5 3,759,157 + PS417_17210 0.59 -0.1 3,759,158 - PS417_17210 0.59 -0.3 3,759,364 + PS417_17210 0.76 -0.3 3,759,365 - PS417_17210 0.76 +0.6 3,759,404 + PS417_17210 0.79 -0.3 3,759,404 + PS417_17210 0.79 -0.0 3,759,569 + -1.3 3,759,569 + +0.0 3,759,570 - -0.3 3,759,570 - +0.0 3,759,570 - -2.5 3,759,657 + +1.2 3,759,714 - -0.6 3,759,833 + -0.1 3,759,834 - +0.4 3,759,834 - -1.3 3,760,025 - +0.3 3,760,025 - +0.9 3,760,119 + -0.5 3,760,119 + -0.2 3,760,120 - -1.3 3,760,120 - +0.4 3,760,154 + -2.4 3,760,165 + -2.6
Or see this region's nucleotide sequence