Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16105 and PS417_16110 are separated by 206 nucleotides PS417_16110 and PS417_16115 are separated by 58 nucleotides
PS417_16105: PS417_16105 - LysR family transcriptional regulator, at 3,530,976 to 3,531,884
_16105
PS417_16110: PS417_16110 - AraC family transcriptional regulator, at 3,532,091 to 3,532,489
_16110
PS417_16115: PS417_16115 - transcriptional regulator, at 3,532,548 to 3,535,310
_16115
Position (kb)
3532
3533 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3531.314 kb on - strand, within PS417_16105 at 3531.314 kb on - strand at 3531.596 kb on + strand, within PS417_16105 at 3531.919 kb on + strand at 3531.919 kb on + strand at 3531.920 kb on - strand at 3532.040 kb on + strand at 3532.109 kb on + strand at 3532.110 kb on - strand at 3532.110 kb on - strand at 3532.406 kb on - strand, within PS417_16110 at 3532.459 kb on - strand at 3532.459 kb on - strand at 3532.466 kb on - strand at 3532.511 kb on - strand at 3532.770 kb on - strand at 3532.821 kb on - strand at 3533.003 kb on + strand, within PS417_16115 at 3533.312 kb on + strand, within PS417_16115 at 3533.312 kb on + strand, within PS417_16115 at 3533.356 kb on - strand, within PS417_16115
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,531,314 - PS417_16105 0.37 +0.6 3,531,314 - +1.4 3,531,596 + PS417_16105 0.68 +0.8 3,531,919 + -0.2 3,531,919 + -1.3 3,531,920 - +0.2 3,532,040 + -0.1 3,532,109 + -0.2 3,532,110 - +0.3 3,532,110 - -0.3 3,532,406 - PS417_16110 0.79 -0.4 3,532,459 - +0.4 3,532,459 - +0.1 3,532,466 - -0.0 3,532,511 - -0.7 3,532,770 - -4.1 3,532,821 - -2.1 3,533,003 + PS417_16115 0.16 +0.1 3,533,312 + PS417_16115 0.28 -1.1 3,533,312 + PS417_16115 0.28 -2.8 3,533,356 - PS417_16115 0.29 +0.4
Or see this region's nucleotide sequence