Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15075 and PS417_15080 are separated by 483 nucleotides PS417_15080 and PS417_15085 are separated by 146 nucleotides
PS417_15075: PS417_15075 - NAD-glutamate dehydrogenase, at 3,293,439 to 3,298,307
_15075
PS417_15080: PS417_15080 - hypothetical protein, at 3,298,791 to 3,299,144
_15080
PS417_15085: PS417_15085 - ATPase AAA, at 3,299,291 to 3,300,250
_15085
Position (kb)
3298
3299
3300 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3297.832 kb on + strand at 3297.832 kb on + strand at 3297.832 kb on + strand at 3298.069 kb on + strand at 3298.332 kb on + strand at 3298.452 kb on + strand at 3298.452 kb on + strand at 3298.453 kb on - strand at 3298.453 kb on - strand at 3299.130 kb on + strand at 3299.228 kb on - strand at 3299.335 kb on + strand at 3299.335 kb on + strand at 3299.336 kb on - strand at 3299.402 kb on - strand, within PS417_15085 at 3299.537 kb on + strand, within PS417_15085 at 3299.690 kb on + strand, within PS417_15085 at 3299.691 kb on - strand, within PS417_15085 at 3299.753 kb on + strand, within PS417_15085 at 3299.833 kb on + strand, within PS417_15085 at 3299.939 kb on + strand, within PS417_15085 at 3299.940 kb on - strand, within PS417_15085 at 3299.940 kb on - strand, within PS417_15085 at 3299.963 kb on + strand, within PS417_15085 at 3299.963 kb on + strand, within PS417_15085
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,297,832 + -0.1 3,297,832 + -2.1 3,297,832 + +0.9 3,298,069 + -2.8 3,298,332 + +0.3 3,298,452 + -0.8 3,298,452 + -0.9 3,298,453 - +0.3 3,298,453 - -0.5 3,299,130 + -0.1 3,299,228 - -2.6 3,299,335 + -2.3 3,299,335 + -2.3 3,299,336 - +0.2 3,299,402 - PS417_15085 0.12 -2.3 3,299,537 + PS417_15085 0.26 -1.6 3,299,690 + PS417_15085 0.42 +1.8 3,299,691 - PS417_15085 0.42 +1.5 3,299,753 + PS417_15085 0.48 -3.6 3,299,833 + PS417_15085 0.56 -1.7 3,299,939 + PS417_15085 0.68 -0.5 3,299,940 - PS417_15085 0.68 -1.2 3,299,940 - PS417_15085 0.68 -1.9 3,299,963 + PS417_15085 0.70 +0.2 3,299,963 + PS417_15085 0.70 -2.9
Or see this region's nucleotide sequence