Strain Fitness in Pseudomonas simiae WCS417 around PS417_08075

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08065 and PS417_08070 overlap by 4 nucleotidesPS417_08070 and PS417_08075 overlap by 4 nucleotidesPS417_08075 and PS417_08080 overlap by 4 nucleotides PS417_08065: PS417_08065 - ABC transporter permease, at 1,764,375 to 1,765,322 _08065 PS417_08070: PS417_08070 - nickel ABC transporter permease, at 1,765,319 to 1,766,176 _08070 PS417_08075: PS417_08075 - methionine ABC transporter ATP-binding protein, at 1,766,173 to 1,767,129 _08075 PS417_08080: PS417_08080 - ABC transporter ATP-binding protein, at 1,767,126 to 1,768,097 _08080 Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -2 -1 0 1 2at 1765.212 kb on + strand, within PS417_08065at 1765.212 kb on + strand, within PS417_08065at 1765.212 kb on + strand, within PS417_08065at 1765.213 kb on - strand, within PS417_08065at 1765.213 kb on - strand, within PS417_08065at 1765.460 kb on + strand, within PS417_08070at 1765.461 kb on - strand, within PS417_08070at 1765.535 kb on + strand, within PS417_08070at 1765.535 kb on + strand, within PS417_08070at 1765.536 kb on - strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.578 kb on + strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.652 kb on + strand, within PS417_08070at 1765.653 kb on - strand, within PS417_08070at 1765.772 kb on + strand, within PS417_08070at 1765.816 kb on + strand, within PS417_08070at 1765.995 kb on - strand, within PS417_08070at 1766.857 kb on + strand, within PS417_08075at 1766.857 kb on + strand, within PS417_08075at 1766.890 kb on + strand, within PS417_08075at 1766.891 kb on - strand, within PS417_08075at 1766.920 kb on + strand, within PS417_08075at 1766.921 kb on - strand, within PS417_08075at 1767.285 kb on - strand, within PS417_08080at 1767.285 kb on - strand, within PS417_08080at 1767.452 kb on + strand, within PS417_08080at 1767.453 kb on - strand, within PS417_08080at 1767.478 kb on + strand, within PS417_08080at 1767.478 kb on + strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.481 kb on + strand, within PS417_08080at 1767.482 kb on - strand, within PS417_08080at 1767.482 kb on - strand, within PS417_08080at 1767.575 kb on + strand, within PS417_08080at 1767.810 kb on + strand, within PS417_08080at 1767.811 kb on - strand, within PS417_08080at 1767.811 kb on - strand, within PS417_08080at 1767.974 kb on + strand, within PS417_08080

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,765,212 + PS417_08065 0.88 +0.8
1,765,212 + PS417_08065 0.88 +0.0
1,765,212 + PS417_08065 0.88 -1.4
1,765,213 - PS417_08065 0.88 -0.0
1,765,213 - PS417_08065 0.88 -1.8
1,765,460 + PS417_08070 0.16 +0.0
1,765,461 - PS417_08070 0.17 -0.1
1,765,535 + PS417_08070 0.25 +0.5
1,765,535 + PS417_08070 0.25 -1.3
1,765,536 - PS417_08070 0.25 -1.1
1,765,561 + PS417_08070 0.28 -0.3
1,765,561 + PS417_08070 0.28 -0.4
1,765,561 + PS417_08070 0.28 +0.3
1,765,578 + PS417_08070 0.30 -0.6
1,765,579 - PS417_08070 0.30 -2.6
1,765,579 - PS417_08070 0.30 -0.1
1,765,579 - PS417_08070 0.30 +0.8
1,765,579 - PS417_08070 0.30 -1.9
1,765,579 - PS417_08070 0.30 -2.6
1,765,652 + PS417_08070 0.39 -0.3
1,765,653 - PS417_08070 0.39 -0.3
1,765,772 + PS417_08070 0.53 +1.1
1,765,816 + PS417_08070 0.58 +1.6
1,765,995 - PS417_08070 0.79 +0.4
1,766,857 + PS417_08075 0.71 -0.7
1,766,857 + PS417_08075 0.71 -0.4
1,766,890 + PS417_08075 0.75 +0.3
1,766,891 - PS417_08075 0.75 -1.6
1,766,920 + PS417_08075 0.78 +0.2
1,766,921 - PS417_08075 0.78 -1.6
1,767,285 - PS417_08080 0.16 -0.1
1,767,285 - PS417_08080 0.16 -0.7
1,767,452 + PS417_08080 0.34 +0.6
1,767,453 - PS417_08080 0.34 -0.3
1,767,478 + PS417_08080 0.36 -0.3
1,767,478 + PS417_08080 0.36 +0.5
1,767,479 - PS417_08080 0.36 -2.1
1,767,479 - PS417_08080 0.36 -0.5
1,767,479 - PS417_08080 0.36 -1.6
1,767,481 + PS417_08080 0.37 +0.1
1,767,482 - PS417_08080 0.37 +2.2
1,767,482 - PS417_08080 0.37 +0.0
1,767,575 + PS417_08080 0.46 -0.4
1,767,810 + PS417_08080 0.70 -0.4
1,767,811 - PS417_08080 0.70 +2.6
1,767,811 - PS417_08080 0.70 -0.2
1,767,974 + PS417_08080 0.87 -1.6

Or see this region's nucleotide sequence