Strain Fitness in Pseudomonas simiae WCS417 around PS417_08015

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08010 and PS417_08015 are separated by 301 nucleotidesPS417_08015 and PS417_08020 overlap by 4 nucleotides PS417_08010: PS417_08010 - adenylate cyclase, at 1,752,246 to 1,753,481 _08010 PS417_08015: PS417_08015 - haloacid dehalogenase, at 1,753,783 to 1,754,406 _08015 PS417_08020: PS417_08020 - LysR family transcriptional regulator, at 1,754,403 to 1,755,308 _08020 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1752.799 kb on + strand, within PS417_08010at 1752.874 kb on + strand, within PS417_08010at 1752.874 kb on + strand, within PS417_08010at 1752.874 kb on + strand, within PS417_08010at 1752.874 kb on + strand, within PS417_08010at 1752.874 kb on + strand, within PS417_08010at 1752.875 kb on - strand, within PS417_08010at 1752.875 kb on - strand, within PS417_08010at 1752.875 kb on - strand, within PS417_08010at 1752.875 kb on - strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.878 kb on + strand, within PS417_08010at 1752.879 kb on - strand, within PS417_08010at 1752.879 kb on - strand, within PS417_08010at 1752.879 kb on - strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.916 kb on + strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1752.917 kb on - strand, within PS417_08010at 1753.233 kb on + strand, within PS417_08010at 1753.234 kb on - strand, within PS417_08010at 1753.258 kb on - strand, within PS417_08010at 1753.267 kb on - strand, within PS417_08010at 1753.267 kb on - strand, within PS417_08010at 1753.267 kb on - strandat 1753.267 kb on - strand, within PS417_08010at 1753.267 kb on - strand, within PS417_08010at 1753.298 kb on + strand, within PS417_08010at 1753.299 kb on - strand, within PS417_08010at 1753.368 kb on + strandat 1753.426 kb on - strandat 1753.428 kb on + strandat 1753.428 kb on + strandat 1753.429 kb on - strandat 1753.429 kb on - strandat 1753.457 kb on + strandat 1753.457 kb on + strandat 1753.565 kb on + strandat 1753.599 kb on - strandat 1753.707 kb on + strandat 1753.708 kb on - strandat 1753.763 kb on + strandat 1753.763 kb on + strandat 1753.763 kb on + strandat 1753.764 kb on - strandat 1753.764 kb on - strandat 1753.764 kb on - strandat 1753.767 kb on + strandat 1753.768 kb on - strandat 1753.783 kb on - strandat 1753.783 kb on - strandat 1753.899 kb on + strand, within PS417_08015at 1753.899 kb on + strand, within PS417_08015at 1753.900 kb on - strand, within PS417_08015at 1754.008 kb on + strand, within PS417_08015at 1754.011 kb on + strand, within PS417_08015at 1754.012 kb on - strand, within PS417_08015at 1754.089 kb on - strand, within PS417_08015at 1754.134 kb on + strand, within PS417_08015at 1754.134 kb on + strand, within PS417_08015at 1754.225 kb on - strand, within PS417_08015at 1754.247 kb on - strand, within PS417_08015at 1754.777 kb on + strand, within PS417_08020at 1754.778 kb on - strand, within PS417_08020at 1754.795 kb on - strand, within PS417_08020at 1754.795 kb on - strand, within PS417_08020at 1754.935 kb on + strand, within PS417_08020at 1754.936 kb on - strand, within PS417_08020at 1754.984 kb on + strand, within PS417_08020at 1754.984 kb on + strand, within PS417_08020at 1754.985 kb on - strand, within PS417_08020at 1755.112 kb on + strand, within PS417_08020at 1755.115 kb on + strand, within PS417_08020at 1755.198 kb on + strand, within PS417_08020at 1755.198 kb on + strand, within PS417_08020at 1755.199 kb on - strand, within PS417_08020at 1755.199 kb on - strand, within PS417_08020at 1755.199 kb on - strand, within PS417_08020at 1755.199 kb on - strand, within PS417_08020at 1755.199 kb on - strand, within PS417_08020at 1755.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,752,799 + PS417_08010 0.45 -0.5
1,752,874 + PS417_08010 0.51 -0.4
1,752,874 + PS417_08010 0.51 +0.2
1,752,874 + PS417_08010 0.51 +0.3
1,752,874 + PS417_08010 0.51 -1.3
1,752,874 + PS417_08010 0.51 +0.6
1,752,875 - PS417_08010 0.51 -0.1
1,752,875 - PS417_08010 0.51 +0.1
1,752,875 - PS417_08010 0.51 -0.1
1,752,875 - PS417_08010 0.51 +0.6
1,752,878 + PS417_08010 0.51 -0.4
1,752,878 + PS417_08010 0.51 +0.7
1,752,878 + PS417_08010 0.51 -0.9
1,752,878 + PS417_08010 0.51 -1.7
1,752,878 + PS417_08010 0.51 +1.0
1,752,878 + PS417_08010 0.51 -2.1
1,752,878 + PS417_08010 0.51 -0.4
1,752,878 + PS417_08010 0.51 +0.9
1,752,879 - PS417_08010 0.51 +0.0
1,752,879 - PS417_08010 0.51 -0.4
1,752,879 - PS417_08010 0.51 +0.6
1,752,916 + PS417_08010 0.54 -0.3
1,752,916 + PS417_08010 0.54 -3.5
1,752,916 + PS417_08010 0.54 +0.1
1,752,916 + PS417_08010 0.54 +0.1
1,752,916 + PS417_08010 0.54 +0.9
1,752,916 + PS417_08010 0.54 +0.6
1,752,916 + PS417_08010 0.54 -1.8
1,752,916 + PS417_08010 0.54 +0.6
1,752,917 - PS417_08010 0.54 -0.3
1,752,917 - PS417_08010 0.54 -2.4
1,752,917 - PS417_08010 0.54 -0.1
1,752,917 - PS417_08010 0.54 +0.0
1,752,917 - PS417_08010 0.54 +0.1
1,752,917 - PS417_08010 0.54 -1.3
1,752,917 - PS417_08010 0.54 -1.3
1,753,233 + PS417_08010 0.80 +0.7
1,753,234 - PS417_08010 0.80 -0.6
1,753,258 - PS417_08010 0.82 -0.2
1,753,267 - PS417_08010 0.83 -0.3
1,753,267 - PS417_08010 0.83 +1.4
1,753,267 - -0.6
1,753,267 - PS417_08010 0.83 -1.0
1,753,267 - PS417_08010 0.83 -0.2
1,753,298 + PS417_08010 0.85 +1.0
1,753,299 - PS417_08010 0.85 -1.7
1,753,368 + +1.4
1,753,426 - +0.6
1,753,428 + -1.0
1,753,428 + +0.9
1,753,429 - +2.5
1,753,429 - -0.1
1,753,457 + +0.4
1,753,457 + -0.1
1,753,565 + +0.6
1,753,599 - +0.9
1,753,707 + -2.7
1,753,708 - +1.1
1,753,763 + -0.2
1,753,763 + +0.5
1,753,763 + -0.8
1,753,764 - +0.4
1,753,764 - -1.7
1,753,764 - +0.6
1,753,767 + +0.3
1,753,768 - +2.2
1,753,783 - -0.4
1,753,783 - -1.3
1,753,899 + PS417_08015 0.19 +0.9
1,753,899 + PS417_08015 0.19 -0.6
1,753,900 - PS417_08015 0.19 -3.3
1,754,008 + PS417_08015 0.36 -1.0
1,754,011 + PS417_08015 0.37 -0.5
1,754,012 - PS417_08015 0.37 -1.0
1,754,089 - PS417_08015 0.49 +0.4
1,754,134 + PS417_08015 0.56 +0.8
1,754,134 + PS417_08015 0.56 -0.8
1,754,225 - PS417_08015 0.71 -1.5
1,754,247 - PS417_08015 0.74 -1.3
1,754,777 + PS417_08020 0.41 -0.6
1,754,778 - PS417_08020 0.41 +0.7
1,754,795 - PS417_08020 0.43 -0.4
1,754,795 - PS417_08020 0.43 +0.7
1,754,935 + PS417_08020 0.59 -0.1
1,754,936 - PS417_08020 0.59 -0.5
1,754,984 + PS417_08020 0.64 +0.9
1,754,984 + PS417_08020 0.64 +1.2
1,754,985 - PS417_08020 0.64 -0.0
1,755,112 + PS417_08020 0.78 +0.0
1,755,115 + PS417_08020 0.79 +0.8
1,755,198 + PS417_08020 0.88 -0.4
1,755,198 + PS417_08020 0.88 +0.7
1,755,199 - PS417_08020 0.88 +0.5
1,755,199 - PS417_08020 0.88 -0.9
1,755,199 - PS417_08020 0.88 +0.0
1,755,199 - PS417_08020 0.88 +2.0
1,755,199 - PS417_08020 0.88 +0.7
1,755,221 + +0.3

Or see this region's nucleotide sequence