Strain Fitness in Pseudomonas simiae WCS417 around PS417_21660

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21655 and PS417_21660 are separated by 95 nucleotidesPS417_21660 and PS417_21665 are separated by 146 nucleotides PS417_21655: PS417_21655 - aspartate kinase, at 4,695,051 to 4,696,292 _21655 PS417_21660: PS417_21660 - alanyl-tRNA synthetase, at 4,696,388 to 4,699,006 _21660 PS417_21665: PS417_21665 - threonine aldolase, at 4,699,153 to 4,700,157 _21665 Position (kb) 4696 4697 4698 4699 4700Strain fitness (log2 ratio) -2 -1 0 1at 4695.564 kb on - strand, within PS417_21655at 4695.567 kb on - strand, within PS417_21655at 4696.326 kb on - strandat 4696.329 kb on - strandat 4696.363 kb on - strandat 4696.390 kb on - strandat 4696.394 kb on - strandat 4699.084 kb on - strandat 4699.106 kb on - strandat 4699.106 kb on - strandat 4699.119 kb on - strandat 4699.317 kb on - strand, within PS417_21665at 4699.317 kb on - strand, within PS417_21665at 4699.317 kb on - strand, within PS417_21665at 4699.433 kb on + strand, within PS417_21665at 4699.434 kb on - strand, within PS417_21665at 4699.434 kb on - strand, within PS417_21665at 4699.434 kb on - strand, within PS417_21665at 4699.640 kb on + strand, within PS417_21665at 4699.723 kb on + strand, within PS417_21665at 4699.892 kb on + strand, within PS417_21665at 4699.893 kb on - strand, within PS417_21665at 4699.898 kb on + strand, within PS417_21665at 4699.898 kb on + strand, within PS417_21665at 4699.899 kb on - strand, within PS417_21665at 4699.899 kb on - strand, within PS417_21665at 4699.903 kb on - strand, within PS417_21665at 4699.926 kb on - strand, within PS417_21665

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,695,564 - PS417_21655 0.41 -2.5
4,695,567 - PS417_21655 0.42 +0.4
4,696,326 - -0.3
4,696,329 - +1.3
4,696,363 - -0.2
4,696,390 - +0.1
4,696,394 - +0.2
4,699,084 - -1.4
4,699,106 - -0.6
4,699,106 - +0.2
4,699,119 - -2.0
4,699,317 - PS417_21665 0.16 +0.3
4,699,317 - PS417_21665 0.16 -1.0
4,699,317 - PS417_21665 0.16 +0.5
4,699,433 + PS417_21665 0.28 +0.4
4,699,434 - PS417_21665 0.28 -0.3
4,699,434 - PS417_21665 0.28 -0.2
4,699,434 - PS417_21665 0.28 +0.0
4,699,640 + PS417_21665 0.48 -0.2
4,699,723 + PS417_21665 0.57 -0.0
4,699,892 + PS417_21665 0.74 +0.5
4,699,893 - PS417_21665 0.74 -0.3
4,699,898 + PS417_21665 0.74 +0.4
4,699,898 + PS417_21665 0.74 +0.3
4,699,899 - PS417_21665 0.74 -0.2
4,699,899 - PS417_21665 0.74 +0.1
4,699,903 - PS417_21665 0.75 -0.7
4,699,926 - PS417_21665 0.77 -0.2

Or see this region's nucleotide sequence