Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15115 and PS417_15120 overlap by 4 nucleotides PS417_15120 and PS417_15125 overlap by 4 nucleotides PS417_15125 and PS417_15135 are separated by 281 nucleotides
PS417_15115: PS417_15115 - exonuclease SbcD, at 3,306,232 to 3,307,473
_15115
PS417_15120: PS417_15120 - chromosome segregation protein SMC, at 3,307,470 to 3,311,108
_15120
PS417_15125: PS417_15125 - glutathione S-transferase, at 3,311,105 to 3,311,698
_15125
PS417_15135: PS417_15135 - hypothetical protein, at 3,311,980 to 3,312,159
_15135
Position (kb)
3307
3308
3309
3310
3311
3312 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3306.704 kb on - strand, within PS417_15115 at 3306.704 kb on - strand, within PS417_15115 at 3307.289 kb on - strand, within PS417_15115 at 3307.391 kb on - strand at 3307.905 kb on + strand, within PS417_15120 at 3308.055 kb on + strand at 3308.111 kb on + strand, within PS417_15120 at 3308.119 kb on + strand, within PS417_15120 at 3308.120 kb on - strand, within PS417_15120 at 3308.483 kb on + strand, within PS417_15120 at 3308.830 kb on + strand, within PS417_15120 at 3308.986 kb on + strand, within PS417_15120 at 3309.309 kb on + strand, within PS417_15120 at 3309.456 kb on + strand, within PS417_15120 at 3309.457 kb on - strand, within PS417_15120 at 3309.457 kb on - strand, within PS417_15120 at 3309.528 kb on + strand, within PS417_15120 at 3311.026 kb on + strand at 3311.123 kb on + strand at 3311.123 kb on + strand at 3311.124 kb on - strand at 3311.349 kb on + strand, within PS417_15125 at 3311.409 kb on - strand, within PS417_15125 at 3311.526 kb on - strand, within PS417_15125 at 3311.696 kb on + strand at 3311.784 kb on - strand at 3312.047 kb on + strand, within PS417_15135 at 3312.048 kb on - strand, within PS417_15135
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,306,704 - PS417_15115 0.38 -0.2 3,306,704 - PS417_15115 0.38 -0.7 3,307,289 - PS417_15115 0.85 -0.7 3,307,391 - -0.6 3,307,905 + PS417_15120 0.12 +0.1 3,308,055 + +0.3 3,308,111 + PS417_15120 0.18 -2.0 3,308,119 + PS417_15120 0.18 -0.3 3,308,120 - PS417_15120 0.18 -0.5 3,308,483 + PS417_15120 0.28 -1.2 3,308,830 + PS417_15120 0.37 -2.0 3,308,986 + PS417_15120 0.42 +0.5 3,309,309 + PS417_15120 0.51 -1.4 3,309,456 + PS417_15120 0.55 -0.9 3,309,457 - PS417_15120 0.55 -0.4 3,309,457 - PS417_15120 0.55 -1.0 3,309,528 + PS417_15120 0.57 -0.2 3,311,026 + -0.2 3,311,123 + +1.8 3,311,123 + -0.4 3,311,124 - -0.0 3,311,349 + PS417_15125 0.41 -0.0 3,311,409 - PS417_15125 0.51 -0.7 3,311,526 - PS417_15125 0.71 +1.0 3,311,696 + -0.4 3,311,784 - +0.3 3,312,047 + PS417_15135 0.37 -0.2 3,312,048 - PS417_15135 0.38 -0.4
Or see this region's nucleotide sequence