Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3742 and Atu3743 are separated by 153 nucleotides Atu3743 and Atu3744 are separated by 261 nucleotides Atu3744 and Atu3745 are separated by 102 nucleotides
Atu3742: Atu3742 - hypothetical protein, at 825,027 to 825,542
Atu3742
Atu3743: Atu3743 - 50S ribosomal protein L31, at 825,696 to 825,917
Atu3743
Atu3744: Atu3744 - ABC transporter permease, at 826,179 to 827,978
Atu3744
Atu3745: Atu3745 - FAD-binding dehydrogenase, at 828,081 to 829,724
Atu3745
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 825.616 kb on + strand at 825.622 kb on - strand at 826.168 kb on + strand at 826.168 kb on + strand at 826.168 kb on + strand at 826.257 kb on - strand at 826.269 kb on - strand at 826.441 kb on - strand, within Atu3744 at 826.522 kb on - strand, within Atu3744 at 826.590 kb on + strand, within Atu3744 at 826.590 kb on + strand, within Atu3744 at 826.590 kb on + strand, within Atu3744 at 826.605 kb on + strand, within Atu3744 at 826.623 kb on - strand, within Atu3744 at 826.639 kb on + strand, within Atu3744 at 826.647 kb on - strand, within Atu3744 at 826.657 kb on + strand, within Atu3744 at 826.668 kb on + strand, within Atu3744 at 826.674 kb on + strand, within Atu3744 at 826.699 kb on + strand, within Atu3744 at 826.769 kb on + strand, within Atu3744 at 826.784 kb on + strand, within Atu3744 at 826.850 kb on - strand, within Atu3744 at 827.110 kb on - strand, within Atu3744 at 827.293 kb on + strand, within Atu3744 at 827.301 kb on - strand, within Atu3744 at 827.459 kb on + strand, within Atu3744 at 827.467 kb on - strand, within Atu3744 at 827.467 kb on - strand, within Atu3744 at 827.549 kb on - strand, within Atu3744 at 827.643 kb on - strand, within Atu3744 at 827.661 kb on - strand, within Atu3744 at 827.828 kb on + strand at 827.894 kb on - strand at 827.980 kb on - strand at 827.980 kb on - strand at 828.084 kb on + strand at 828.087 kb on - strand at 828.162 kb on - strand at 828.254 kb on - strand, within Atu3745 at 828.274 kb on - strand, within Atu3745 at 828.486 kb on - strand, within Atu3745 at 828.496 kb on - strand, within Atu3745 at 828.524 kb on + strand, within Atu3745 at 828.655 kb on + strand, within Atu3745 at 828.663 kb on - strand, within Atu3745 at 828.663 kb on - strand, within Atu3745 at 828.688 kb on + strand, within Atu3745 at 828.883 kb on + strand, within Atu3745 at 828.914 kb on + strand, within Atu3745
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 825,616 + +0.3 825,622 - +0.3 826,168 + +0.3 826,168 + +0.4 826,168 + +0.5 826,257 - -0.4 826,269 - -0.3 826,441 - Atu3744 0.15 -1.8 826,522 - Atu3744 0.19 -2.0 826,590 + Atu3744 0.23 -1.7 826,590 + Atu3744 0.23 -0.9 826,590 + Atu3744 0.23 -3.6 826,605 + Atu3744 0.24 -1.0 826,623 - Atu3744 0.25 -0.8 826,639 + Atu3744 0.26 -2.3 826,647 - Atu3744 0.26 -2.3 826,657 + Atu3744 0.27 -0.3 826,668 + Atu3744 0.27 -0.9 826,674 + Atu3744 0.28 -2.2 826,699 + Atu3744 0.29 -3.7 826,769 + Atu3744 0.33 -3.1 826,784 + Atu3744 0.34 -3.6 826,850 - Atu3744 0.37 +1.3 827,110 - Atu3744 0.52 -1.6 827,293 + Atu3744 0.62 -0.5 827,301 - Atu3744 0.62 -1.9 827,459 + Atu3744 0.71 -1.1 827,467 - Atu3744 0.72 -1.7 827,467 - Atu3744 0.72 -2.4 827,549 - Atu3744 0.76 +1.0 827,643 - Atu3744 0.81 -3.2 827,661 - Atu3744 0.82 -0.3 827,828 + -1.7 827,894 - -3.3 827,980 - -0.7 827,980 - -3.7 828,084 + +1.0 828,087 - -0.0 828,162 - +1.0 828,254 - Atu3745 0.11 -0.2 828,274 - Atu3745 0.12 +0.6 828,486 - Atu3745 0.25 -0.5 828,496 - Atu3745 0.25 +0.4 828,524 + Atu3745 0.27 +0.1 828,655 + Atu3745 0.35 -0.3 828,663 - Atu3745 0.35 -0.8 828,663 - Atu3745 0.35 +1.1 828,688 + Atu3745 0.37 -1.7 828,883 + Atu3745 0.49 +0.8 828,914 + Atu3745 0.51 -0.9
Or see this region's nucleotide sequence