Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3665 and Atu8034 are separated by 69 nucleotides Atu8034 and Atu3666 are separated by 12 nucleotides Atu3666 and Atu3667 are separated by 54 nucleotides Atu3667 and Atu3668 are separated by 31 nucleotides Atu3668 and Atu3669 are separated by 114 nucleotides
Atu3665: Atu3665 - short-chain dehydrogenase, at 714,038 to 714,784
Atu3665
Atu8034: Atu8034 - hypothetical protein, at 714,854 to 715,033
Atu8034
Atu3666: Atu3666 - hypothetical protein, at 715,046 to 715,504
Atu3666
Atu3667: Atu3667 - aspartate alpha-decarboxylase, at 715,559 to 716,026
Atu3667
Atu3668: Atu3668 - siderophore biosynthesis protein, at 716,058 to 716,579
Atu3668
Atu3669: Atu3669 - siderophore biosynthesis protein, at 716,694 to 718,055
Atu3669
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1
2 at 714.608 kb on + strand, within Atu3665 at 714.608 kb on + strand, within Atu3665 at 714.608 kb on + strand, within Atu3665 at 714.616 kb on - strand, within Atu3665 at 714.630 kb on + strand, within Atu3665 at 714.641 kb on + strand, within Atu3665 at 714.672 kb on + strand, within Atu3665 at 714.674 kb on + strand, within Atu3665 at 714.680 kb on - strand, within Atu3665 at 714.817 kb on - strand at 714.900 kb on - strand, within Atu8034 at 714.908 kb on + strand, within Atu8034 at 715.006 kb on + strand, within Atu8034 at 715.024 kb on - strand at 715.049 kb on + strand at 715.067 kb on - strand at 715.133 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.210 kb on + strand, within Atu3666 at 715.215 kb on + strand, within Atu3666 at 715.292 kb on - strand, within Atu3666 at 715.489 kb on - strand at 715.507 kb on - strand at 715.650 kb on + strand, within Atu3667 at 715.749 kb on + strand, within Atu3667 at 715.849 kb on + strand, within Atu3667 at 715.876 kb on - strand, within Atu3667 at 715.883 kb on - strand, within Atu3667 at 715.996 kb on + strand at 716.001 kb on + strand at 716.001 kb on + strand at 716.150 kb on + strand, within Atu3668 at 716.355 kb on - strand, within Atu3668 at 716.458 kb on - strand, within Atu3668 at 716.517 kb on - strand, within Atu3668 at 716.612 kb on - strand at 716.638 kb on + strand at 716.646 kb on - strand at 716.646 kb on - strand at 716.714 kb on - strand at 716.716 kb on - strand at 716.738 kb on + strand at 716.770 kb on - strand at 716.770 kb on - strand at 716.770 kb on - strand at 716.781 kb on + strand at 716.788 kb on - strand at 716.789 kb on - strand at 716.837 kb on + strand, within Atu3669 at 716.845 kb on + strand, within Atu3669 at 716.981 kb on - strand, within Atu3669
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 714,608 + Atu3665 0.76 -0.4 714,608 + Atu3665 0.76 +1.4 714,608 + Atu3665 0.76 +0.2 714,616 - Atu3665 0.77 -0.4 714,630 + Atu3665 0.79 +0.0 714,641 + Atu3665 0.81 +1.5 714,672 + Atu3665 0.85 -1.3 714,674 + Atu3665 0.85 -0.5 714,680 - Atu3665 0.86 -0.2 714,817 - +0.2 714,900 - Atu8034 0.26 +0.5 714,908 + Atu8034 0.30 +0.8 715,006 + Atu8034 0.84 -1.3 715,024 - -0.1 715,049 + +0.3 715,067 - +2.1 715,133 - Atu3666 0.19 -0.7 715,151 - Atu3666 0.23 -0.6 715,151 - Atu3666 0.23 +1.1 715,151 - Atu3666 0.23 -0.4 715,210 + Atu3666 0.36 +1.3 715,215 + Atu3666 0.37 +0.2 715,292 - Atu3666 0.54 -0.2 715,489 - +0.1 715,507 - +0.5 715,650 + Atu3667 0.19 +1.6 715,749 + Atu3667 0.41 -1.7 715,849 + Atu3667 0.62 +1.0 715,876 - Atu3667 0.68 -0.4 715,883 - Atu3667 0.69 +1.4 715,996 + -2.3 716,001 + +0.1 716,001 + +0.1 716,150 + Atu3668 0.18 +0.0 716,355 - Atu3668 0.57 -2.5 716,458 - Atu3668 0.77 -2.2 716,517 - Atu3668 0.88 -1.1 716,612 - +0.8 716,638 + -0.1 716,646 - +0.8 716,646 - -2.0 716,714 - -0.8 716,716 - +0.3 716,738 + +0.9 716,770 - -0.2 716,770 - -2.2 716,770 - +1.4 716,781 + +1.5 716,788 - +0.8 716,789 - +0.8 716,837 + Atu3669 0.10 +0.8 716,845 + Atu3669 0.11 +1.7 716,981 - Atu3669 0.21 -0.6
Or see this region's nucleotide sequence