Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3534 and Atu3535 are separated by 10 nucleotides Atu3535 and Atu3536 are separated by 4 nucleotides Atu3536 and Atu3537 are separated by 3 nucleotides Atu3537 and Atu3538 are separated by 135 nucleotides Atu3538 and Atu3539 are separated by 30 nucleotides
Atu3534: Atu3534 - ABC transporter permease, at 583,646 to 584,686
Atu3534
Atu3535: Atu3535 - ABC transporter permease, at 584,697 to 585,674
Atu3535
Atu3536: Atu3536 - ABC transporter permease, at 585,679 to 587,220
Atu3536
Atu3537: Atu3537 - hypothetical protein, at 587,224 to 587,433
Atu3537
Atu3538: Atu3538 - hypothetical protein, at 587,569 to 588,084
Atu3538
Atu3539: Atu3539 - hypothetical protein, at 588,115 to 588,672
Atu3539
Position (kb) 585
586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 584.690 kb on - strand at 584.695 kb on - strand at 584.723 kb on - strand at 584.769 kb on - strand at 584.825 kb on + strand, within Atu3535 at 584.960 kb on + strand, within Atu3535 at 584.968 kb on - strand, within Atu3535 at 584.968 kb on - strand, within Atu3535 at 584.969 kb on - strand, within Atu3535 at 585.095 kb on - strand, within Atu3535 at 585.192 kb on + strand, within Atu3535 at 585.210 kb on - strand, within Atu3535 at 585.226 kb on + strand, within Atu3535 at 585.324 kb on - strand, within Atu3535 at 585.405 kb on - strand, within Atu3535 at 585.449 kb on - strand, within Atu3535 at 585.480 kb on - strand, within Atu3535 at 585.523 kb on + strand, within Atu3535 at 585.560 kb on + strand, within Atu3535 at 585.831 kb on + strand at 585.950 kb on + strand, within Atu3536 at 586.028 kb on + strand, within Atu3536 at 586.033 kb on + strand, within Atu3536 at 586.033 kb on + strand, within Atu3536 at 586.053 kb on + strand, within Atu3536 at 586.066 kb on - strand, within Atu3536 at 586.066 kb on - strand, within Atu3536 at 586.164 kb on - strand, within Atu3536 at 586.171 kb on - strand, within Atu3536 at 586.196 kb on + strand, within Atu3536 at 586.204 kb on - strand, within Atu3536 at 586.367 kb on + strand, within Atu3536 at 586.375 kb on - strand, within Atu3536 at 586.376 kb on - strand, within Atu3536 at 586.400 kb on - strand, within Atu3536 at 586.441 kb on + strand, within Atu3536 at 586.459 kb on - strand, within Atu3536 at 586.476 kb on - strand, within Atu3536 at 586.615 kb on - strand, within Atu3536 at 586.634 kb on + strand, within Atu3536 at 586.673 kb on + strand, within Atu3536 at 586.701 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.761 kb on - strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on - strand, within Atu3536 at 586.968 kb on - strand, within Atu3536 at 586.983 kb on + strand, within Atu3536 at 587.101 kb on + strand at 587.101 kb on + strand at 587.109 kb on - strand at 587.109 kb on - strand at 587.113 kb on + strand at 587.113 kb on + strand at 587.114 kb on - strand at 587.121 kb on - strand at 587.121 kb on - strand at 587.174 kb on - strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.191 kb on - strand at 587.202 kb on - strand at 587.215 kb on + strand at 587.220 kb on + strand at 587.221 kb on - strand at 587.287 kb on - strand, within Atu3537 at 587.461 kb on - strand at 588.104 kb on + strand at 588.118 kb on + strand at 588.191 kb on + strand, within Atu3539
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 584,690 - -2.3 584,695 - +0.1 584,723 - -0.2 584,769 - -0.3 584,825 + Atu3535 0.13 -0.6 584,960 + Atu3535 0.27 +1.2 584,968 - Atu3535 0.28 -0.0 584,968 - Atu3535 0.28 -0.3 584,969 - Atu3535 0.28 -0.7 585,095 - Atu3535 0.41 -2.7 585,192 + Atu3535 0.51 +0.3 585,210 - Atu3535 0.52 +2.1 585,226 + Atu3535 0.54 -0.6 585,324 - Atu3535 0.64 +0.3 585,405 - Atu3535 0.72 -2.9 585,449 - Atu3535 0.77 +0.4 585,480 - Atu3535 0.80 -2.5 585,523 + Atu3535 0.84 -1.4 585,560 + Atu3535 0.88 -0.6 585,831 + +0.5 585,950 + Atu3536 0.18 +0.2 586,028 + Atu3536 0.23 -1.7 586,033 + Atu3536 0.23 +0.5 586,033 + Atu3536 0.23 -1.0 586,053 + Atu3536 0.24 -0.6 586,066 - Atu3536 0.25 -0.1 586,066 - Atu3536 0.25 -1.4 586,164 - Atu3536 0.31 -0.7 586,171 - Atu3536 0.32 -0.3 586,196 + Atu3536 0.34 -0.9 586,204 - Atu3536 0.34 -0.1 586,367 + Atu3536 0.45 -0.8 586,375 - Atu3536 0.45 +0.2 586,376 - Atu3536 0.45 -0.1 586,400 - Atu3536 0.47 +1.3 586,441 + Atu3536 0.49 -0.3 586,459 - Atu3536 0.51 +0.2 586,476 - Atu3536 0.52 -0.6 586,615 - Atu3536 0.61 -0.4 586,634 + Atu3536 0.62 -2.7 586,673 + Atu3536 0.64 +0.0 586,701 + Atu3536 0.66 +1.3 586,735 + Atu3536 0.68 +2.0 586,735 + Atu3536 0.68 -0.1 586,735 + Atu3536 0.68 +1.3 586,761 - Atu3536 0.70 -1.2 586,853 + Atu3536 0.76 +1.2 586,853 + Atu3536 0.76 +0.4 586,853 - Atu3536 0.76 -1.6 586,968 - Atu3536 0.84 +0.8 586,983 + Atu3536 0.85 -1.4 587,101 + +0.5 587,101 + +0.2 587,109 - +0.2 587,109 - +0.3 587,113 + -0.6 587,113 + +0.5 587,114 - -2.2 587,121 - -1.3 587,121 - +0.7 587,174 - +1.6 587,183 + -1.2 587,183 + +0.6 587,183 + -0.2 587,191 - +0.1 587,202 - +0.0 587,215 + +0.3 587,220 + +0.7 587,221 - -0.6 587,287 - Atu3537 0.30 +0.7 587,461 - -0.6 588,104 + -0.6 588,118 + +2.5 588,191 + Atu3539 0.14 +3.2
Or see this region's nucleotide sequence