Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3333 and Atu3334 overlap by 4 nucleotides Atu3334 and Atu3335 are separated by 246 nucleotides Atu3335 and Atu8031 are separated by 41 nucleotides Atu8031 and Atu3336 are separated by 223 nucleotides Atu3336 and Atu3337 are separated by 174 nucleotides
Atu3333: Atu3333 - 3-ketoacyl-ACP reductase, at 368,557 to 369,342
Atu3333
Atu3334: Atu3334 - hypothetical protein, at 369,339 to 369,572
Atu3334
Atu3335: Atu3335 - 3-methyladenine DNA glycosylase, at 369,819 to 370,400
Atu3335
Atu8031: Atu8031 - hypothetical protein, at 370,442 to 370,600
Atu8031
Atu3336: Atu3336 - hypothetical protein, at 370,824 to 371,021
Atu3336
Atu3337: Atu3337 - LacI family transcriptional regulator, at 371,196 to 372,209
Atu3337
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 368.858 kb on - strand, within Atu3333 at 368.880 kb on + strand, within Atu3333 at 368.889 kb on + strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.922 kb on + strand, within Atu3333 at 368.961 kb on + strand, within Atu3333 at 368.976 kb on - strand, within Atu3333 at 369.021 kb on + strand, within Atu3333 at 369.078 kb on + strand, within Atu3333 at 369.138 kb on - strand, within Atu3333 at 369.267 kb on + strand at 369.267 kb on + strand at 369.307 kb on + strand at 369.362 kb on + strand at 369.382 kb on - strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.466 kb on + strand, within Atu3334 at 369.480 kb on + strand, within Atu3334 at 369.636 kb on + strand at 369.644 kb on - strand at 369.820 kb on - strand at 369.853 kb on - strand at 369.876 kb on + strand at 369.950 kb on + strand, within Atu3335 at 370.011 kb on + strand, within Atu3335 at 370.014 kb on - strand, within Atu3335 at 370.031 kb on + strand, within Atu3335 at 370.066 kb on - strand, within Atu3335 at 370.204 kb on - strand, within Atu3335 at 370.226 kb on + strand, within Atu3335 at 370.229 kb on + strand, within Atu3335 at 370.236 kb on + strand, within Atu3335 at 370.279 kb on - strand, within Atu3335 at 370.297 kb on - strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.336 kb on - strand, within Atu3335 at 370.384 kb on + strand at 370.392 kb on - strand at 370.402 kb on - strand at 370.426 kb on - strand at 370.512 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.609 kb on + strand at 370.622 kb on + strand at 370.622 kb on + strand at 370.627 kb on + strand at 370.630 kb on - strand at 370.635 kb on - strand at 370.741 kb on + strand at 370.881 kb on + strand, within Atu3336 at 370.922 kb on + strand, within Atu3336 at 370.925 kb on - strand, within Atu3336 at 370.990 kb on - strand, within Atu3336 at 371.154 kb on - strand at 371.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 368,858 - Atu3333 0.38 +1.4 368,880 + Atu3333 0.41 -0.9 368,889 + Atu3333 0.42 -1.6 368,897 - Atu3333 0.43 -2.3 368,897 - Atu3333 0.43 -1.0 368,897 - Atu3333 0.43 -0.5 368,922 + Atu3333 0.46 +0.6 368,961 + Atu3333 0.51 +1.2 368,976 - Atu3333 0.53 -0.0 369,021 + Atu3333 0.59 +0.6 369,078 + Atu3333 0.66 +1.1 369,138 - Atu3333 0.74 -0.8 369,267 + -0.9 369,267 + -0.3 369,307 + +2.4 369,362 + -0.4 369,382 - Atu3334 0.18 -0.2 369,445 + Atu3334 0.45 +1.4 369,445 + Atu3334 0.45 -0.3 369,445 + Atu3334 0.45 -0.1 369,453 - Atu3334 0.49 +0.7 369,453 - Atu3334 0.49 +0.7 369,466 + Atu3334 0.54 +0.4 369,480 + Atu3334 0.60 +1.0 369,636 + -1.3 369,644 - +0.1 369,820 - +2.7 369,853 - +1.0 369,876 + -1.3 369,950 + Atu3335 0.23 -1.2 370,011 + Atu3335 0.33 -0.9 370,014 - Atu3335 0.34 -1.2 370,031 + Atu3335 0.36 -1.6 370,066 - Atu3335 0.42 -0.2 370,204 - Atu3335 0.66 -1.3 370,226 + Atu3335 0.70 -0.7 370,229 + Atu3335 0.70 -2.1 370,236 + Atu3335 0.72 -0.6 370,279 - Atu3335 0.79 -2.4 370,297 - Atu3335 0.82 -1.1 370,328 + Atu3335 0.87 -2.7 370,328 + Atu3335 0.87 -0.0 370,336 - Atu3335 0.89 -1.3 370,384 + +1.0 370,392 - -0.3 370,402 - +1.0 370,426 - -1.2 370,512 + Atu8031 0.44 +0.3 370,572 + Atu8031 0.82 -0.2 370,572 + Atu8031 0.82 -1.2 370,572 + Atu8031 0.82 +0.2 370,609 + -0.8 370,622 + -0.1 370,622 + +1.8 370,627 + -0.6 370,630 - +2.8 370,635 - -0.4 370,741 + -2.3 370,881 + Atu3336 0.29 -2.4 370,922 + Atu3336 0.49 +1.8 370,925 - Atu3336 0.51 +0.8 370,990 - Atu3336 0.84 -0.0 371,154 - -1.6 371,193 + -1.1
Or see this region's nucleotide sequence