Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8140 and Atu0953 are separated by 58 nucleotides Atu0953 and Atu0954 are separated by 256 nucleotides
Atu8140: Atu8140 - hypothetical protein, at 942,423 to 943,076
Atu8140
Atu0953: Atu0953 - hypothetical protein, at 943,135 to 943,443
Atu0953
Atu0954: Atu0954 - phage head portal protein, at 943,700 to 944,866
Atu0954
Position (kb) 943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 942.180 kb on + strand at 942.210 kb on + strand at 942.225 kb on - strand at 942.271 kb on + strand at 942.420 kb on + strand at 942.492 kb on + strand, within Atu8140 at 942.542 kb on + strand, within Atu8140 at 942.620 kb on + strand, within Atu8140 at 942.806 kb on - strand, within Atu8140 at 942.811 kb on - strand, within Atu8140 at 942.836 kb on + strand, within Atu8140 at 942.877 kb on - strand, within Atu8140 at 942.909 kb on - strand, within Atu8140 at 942.984 kb on - strand, within Atu8140 at 942.986 kb on + strand, within Atu8140 at 943.052 kb on + strand at 943.081 kb on + strand at 943.114 kb on - strand at 943.114 kb on - strand at 943.251 kb on + strand, within Atu0953 at 943.367 kb on + strand, within Atu0953 at 943.486 kb on - strand at 943.523 kb on + strand at 943.531 kb on - strand at 943.531 kb on - strand at 943.624 kb on + strand at 943.780 kb on + strand at 943.801 kb on + strand at 943.838 kb on - strand, within Atu0954 at 944.034 kb on + strand, within Atu0954 at 944.109 kb on + strand, within Atu0954 at 944.112 kb on - strand, within Atu0954 at 944.119 kb on + strand, within Atu0954 at 944.127 kb on - strand, within Atu0954 at 944.169 kb on + strand, within Atu0954 at 944.171 kb on + strand, within Atu0954 at 944.238 kb on + strand, within Atu0954 at 944.273 kb on - strand, within Atu0954 at 944.341 kb on + strand, within Atu0954 at 944.364 kb on - strand, within Atu0954 at 944.406 kb on - strand, within Atu0954 at 944.437 kb on + strand, within Atu0954 at 944.441 kb on - strand, within Atu0954
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 942,180 + +0.2 942,210 + +0.1 942,225 - +0.3 942,271 + -0.8 942,420 + +0.1 942,492 + Atu8140 0.11 +0.5 942,542 + Atu8140 0.18 -2.7 942,620 + Atu8140 0.30 -0.3 942,806 - Atu8140 0.59 +0.0 942,811 - Atu8140 0.59 +0.4 942,836 + Atu8140 0.63 +0.2 942,877 - Atu8140 0.69 -1.6 942,909 - Atu8140 0.74 -0.4 942,984 - Atu8140 0.86 +0.5 942,986 + Atu8140 0.86 -0.0 943,052 + +1.2 943,081 + -0.8 943,114 - +0.0 943,114 - -0.6 943,251 + Atu0953 0.38 -2.4 943,367 + Atu0953 0.75 -1.0 943,486 - +0.5 943,523 + +2.4 943,531 - +0.9 943,531 - -0.3 943,624 + +0.2 943,780 + -0.2 943,801 + -1.1 943,838 - Atu0954 0.12 +0.1 944,034 + Atu0954 0.29 +0.9 944,109 + Atu0954 0.35 +1.0 944,112 - Atu0954 0.35 +1.4 944,119 + Atu0954 0.36 +0.0 944,127 - Atu0954 0.37 +1.1 944,169 + Atu0954 0.40 -0.1 944,171 + Atu0954 0.40 +1.1 944,238 + Atu0954 0.46 -1.8 944,273 - Atu0954 0.49 -1.9 944,341 + Atu0954 0.55 +1.9 944,364 - Atu0954 0.57 +2.3 944,406 - Atu0954 0.60 +0.7 944,437 + Atu0954 0.63 -0.6 944,441 - Atu0954 0.63 +0.9
Or see this region's nucleotide sequence