Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0703 and Atu0704 are separated by 15 nucleotides Atu0704 and Atu0705 overlap by 1 nucleotides Atu0705 and Atu0706 are separated by 109 nucleotides
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875
Atu0706
Position (kb) 705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704 at 704.603 kb on - strand, within Atu0704 at 704.622 kb on + strand, within Atu0704 at 704.651 kb on + strand, within Atu0704 at 704.693 kb on - strand, within Atu0704 at 704.747 kb on + strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.804 kb on + strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.916 kb on - strand, within Atu0704 at 704.917 kb on - strand, within Atu0704 at 704.951 kb on + strand, within Atu0704 at 704.998 kb on - strand, within Atu0704 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand at 705.294 kb on + strand, within Atu0705 at 705.441 kb on - strand, within Atu0705 at 705.499 kb on + strand, within Atu0705 at 705.507 kb on - strand, within Atu0705 at 705.527 kb on - strand, within Atu0705 at 705.529 kb on + strand, within Atu0705 at 705.569 kb on + strand, within Atu0705 at 705.598 kb on - strand, within Atu0705 at 705.670 kb on + strand, within Atu0705 at 705.678 kb on - strand, within Atu0705 at 705.772 kb on + strand, within Atu0705 at 705.775 kb on - strand, within Atu0705 at 705.828 kb on + strand, within Atu0705 at 705.886 kb on + strand at 705.886 kb on + strand at 705.888 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 706.008 kb on + strand at 706.016 kb on - strand at 706.086 kb on - strand at 706.214 kb on - strand, within Atu0706 at 706.292 kb on + strand, within Atu0706 at 706.310 kb on - strand, within Atu0706 at 706.328 kb on - strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.414 kb on - strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.462 kb on - strand, within Atu0706 at 706.520 kb on + strand, within Atu0706 at 706.662 kb on - strand, within Atu0706 at 706.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 704,336 + Atu0704 0.11 -0.9 704,336 + Atu0704 0.11 +0.9 704,358 + Atu0704 0.13 -0.2 704,474 - Atu0704 0.26 +1.0 704,484 - Atu0704 0.27 +0.1 704,541 - Atu0704 0.33 -2.5 704,541 - Atu0704 0.33 +1.1 704,571 - Atu0704 0.36 -0.9 704,603 - Atu0704 0.40 -0.2 704,622 + Atu0704 0.42 +0.1 704,651 + Atu0704 0.45 -0.1 704,693 - Atu0704 0.50 +1.8 704,747 + Atu0704 0.56 -0.1 704,755 - Atu0704 0.56 -0.4 704,755 - Atu0704 0.56 -2.1 704,804 + Atu0704 0.62 -0.2 704,812 - Atu0704 0.63 +0.2 704,812 - Atu0704 0.63 +1.4 704,812 - Atu0704 0.63 +2.2 704,812 - Atu0704 0.63 -1.5 704,916 - Atu0704 0.74 +0.8 704,917 - Atu0704 0.74 +0.3 704,951 + Atu0704 0.78 -1.4 704,998 - Atu0704 0.83 -0.1 705,125 - +0.3 705,131 - -0.2 705,151 + +1.7 705,294 + Atu0705 0.18 -0.3 705,441 - Atu0705 0.37 +0.5 705,499 + Atu0705 0.45 +0.6 705,507 - Atu0705 0.46 -1.2 705,527 - Atu0705 0.48 -0.7 705,529 + Atu0705 0.49 +0.3 705,569 + Atu0705 0.54 +0.8 705,598 - Atu0705 0.57 +0.3 705,670 + Atu0705 0.67 +0.0 705,678 - Atu0705 0.68 +0.4 705,772 + Atu0705 0.80 +1.7 705,775 - Atu0705 0.80 -0.0 705,828 + Atu0705 0.87 +0.6 705,886 + +1.9 705,886 + +1.2 705,888 - +1.5 705,894 - -0.3 705,894 - -3.0 705,894 - +1.1 706,008 + -0.1 706,016 - +0.3 706,086 - -0.6 706,214 - Atu0706 0.21 +0.8 706,292 + Atu0706 0.30 -0.4 706,310 - Atu0706 0.33 -0.1 706,328 - Atu0706 0.35 +0.1 706,331 + Atu0706 0.35 -0.2 706,331 + Atu0706 0.35 -0.3 706,331 + Atu0706 0.35 +0.7 706,339 - Atu0706 0.36 +0.1 706,339 - Atu0706 0.36 +1.1 706,414 - Atu0706 0.45 -1.3 706,443 + Atu0706 0.48 -0.9 706,443 + Atu0706 0.48 -0.3 706,462 - Atu0706 0.51 -3.3 706,520 + Atu0706 0.58 -0.3 706,662 - Atu0706 0.75 +0.1 706,799 - -0.1
Or see this region's nucleotide sequence