Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0352 and Atu0353 are separated by 43 nucleotides Atu0353 and Atu0354 are separated by 69 nucleotides Atu0354 and Atu0355 are separated by 30 nucleotides
Atu0352: Atu0352 - hypothetical protein, at 346,963 to 347,631
Atu0352
Atu0353: Atu0353 - acetyltransferase, at 347,675 to 348,169
Atu0353
Atu0354: Atu0354 - ferric uptake regulator, at 348,239 to 348,667
Atu0354
Atu0355: Atu0355 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 348,698 to 349,492
Atu0355
Position (kb) 348
349 Strain fitness (log2 ratio) -2
-1
0
1 at 347.601 kb on - strand at 347.622 kb on - strand at 347.622 kb on - strand at 347.726 kb on - strand, within Atu0353 at 347.770 kb on + strand, within Atu0353 at 347.843 kb on + strand, within Atu0353 at 347.927 kb on + strand, within Atu0353 at 347.965 kb on - strand, within Atu0353 at 347.996 kb on + strand, within Atu0353 at 348.004 kb on - strand, within Atu0353 at 348.024 kb on + strand, within Atu0353 at 348.025 kb on - strand, within Atu0353 at 348.056 kb on - strand, within Atu0353 at 348.061 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.112 kb on - strand, within Atu0353 at 348.126 kb on - strand at 348.134 kb on - strand at 348.240 kb on + strand at 348.271 kb on - strand at 348.299 kb on + strand, within Atu0354 at 348.307 kb on - strand, within Atu0354 at 348.362 kb on + strand, within Atu0354 at 348.389 kb on - strand, within Atu0354 at 348.409 kb on + strand, within Atu0354 at 348.420 kb on + strand, within Atu0354 at 348.724 kb on - strand at 348.757 kb on - strand at 348.880 kb on - strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.962 kb on - strand, within Atu0355 at 348.995 kb on + strand, within Atu0355 at 349.069 kb on - strand, within Atu0355 at 349.154 kb on - strand, within Atu0355 at 349.261 kb on + strand, within Atu0355 at 349.268 kb on + strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.327 kb on - strand, within Atu0355 at 349.454 kb on + strand at 349.461 kb on + strand at 349.502 kb on - strand at 349.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 347,601 - -2.6 347,622 - -1.5 347,622 - -1.4 347,726 - Atu0353 0.10 -1.5 347,770 + Atu0353 0.19 -2.6 347,843 + Atu0353 0.34 +1.4 347,927 + Atu0353 0.51 -0.9 347,965 - Atu0353 0.59 -2.7 347,996 + Atu0353 0.65 -0.9 348,004 - Atu0353 0.66 -0.8 348,024 + Atu0353 0.71 -0.5 348,025 - Atu0353 0.71 -2.2 348,056 - Atu0353 0.77 -1.6 348,061 - Atu0353 0.78 -1.6 348,086 - Atu0353 0.83 +0.1 348,086 - Atu0353 0.83 -0.3 348,112 - Atu0353 0.88 +1.4 348,126 - +0.0 348,134 - +0.1 348,240 + -0.5 348,271 - +1.4 348,299 + Atu0354 0.14 +0.1 348,307 - Atu0354 0.16 +1.4 348,362 + Atu0354 0.29 -0.5 348,389 - Atu0354 0.35 +0.9 348,409 + Atu0354 0.40 -1.8 348,420 + Atu0354 0.42 +1.4 348,724 - -0.9 348,757 - -0.4 348,880 - Atu0355 0.23 -0.6 348,882 + Atu0355 0.23 +0.4 348,882 + Atu0355 0.23 +0.3 348,962 - Atu0355 0.33 -1.3 348,995 + Atu0355 0.37 -0.9 349,069 - Atu0355 0.47 -1.5 349,154 - Atu0355 0.57 +0.8 349,261 + Atu0355 0.71 -0.2 349,268 + Atu0355 0.72 -0.2 349,269 - Atu0355 0.72 +0.0 349,269 - Atu0355 0.72 +0.3 349,311 + Atu0355 0.77 -0.2 349,311 + Atu0355 0.77 -1.1 349,327 - Atu0355 0.79 -0.6 349,454 + +1.1 349,461 + -0.4 349,502 - -0.6 349,574 + +0.4
Or see this region's nucleotide sequence