Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0231 and Atu0232 are separated by 87 nucleotides Atu0232 and Atu0233 are separated by 182 nucleotides Atu0233 and Atu0234 are separated by 3 nucleotides
Atu0231: Atu0231 - GMP synthase, at 232,091 to 232,765
Atu0231
Atu0232: Atu0232 - hypothetical protein, at 232,853 to 233,041
Atu0232
Atu0233: Atu0233 - lysozyme, at 233,224 to 234,321
Atu0233
Atu0234: Atu0234 - conserved hypothetical protein, membrane protein, at 234,325 to 235,200
Atu0234
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 232.252 kb on + strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.293 kb on - strand, within Atu0231 at 232.306 kb on + strand, within Atu0231 at 232.331 kb on - strand, within Atu0231 at 232.334 kb on + strand, within Atu0231 at 232.401 kb on + strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.541 kb on + strand, within Atu0231 at 232.727 kb on + strand at 232.744 kb on + strand at 232.884 kb on - strand, within Atu0232 at 232.902 kb on + strand, within Atu0232 at 232.952 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.965 kb on - strand, within Atu0232 at 232.965 kb on - strand, within Atu0232 at 233.013 kb on + strand, within Atu0232 at 233.021 kb on - strand, within Atu0232 at 233.200 kb on - strand at 233.210 kb on + strand at 233.258 kb on - strand at 233.388 kb on + strand, within Atu0233 at 233.429 kb on - strand, within Atu0233 at 233.432 kb on + strand, within Atu0233 at 233.448 kb on + strand, within Atu0233 at 233.486 kb on - strand, within Atu0233 at 233.619 kb on + strand, within Atu0233 at 233.654 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on - strand, within Atu0233 at 233.716 kb on - strand, within Atu0233 at 233.730 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.742 kb on - strand, within Atu0233 at 233.752 kb on - strand, within Atu0233 at 233.830 kb on + strand, within Atu0233 at 233.897 kb on - strand, within Atu0233 at 233.999 kb on + strand, within Atu0233 at 234.063 kb on + strand, within Atu0233 at 234.063 kb on + strand, within Atu0233 at 234.169 kb on - strand, within Atu0233 at 234.181 kb on + strand, within Atu0233 at 234.366 kb on - strand at 234.374 kb on - strand at 234.390 kb on - strand at 234.426 kb on + strand, within Atu0234 at 234.443 kb on + strand, within Atu0234 at 234.489 kb on - strand, within Atu0234 at 234.669 kb on + strand, within Atu0234 at 234.689 kb on - strand, within Atu0234 at 234.939 kb on + strand, within Atu0234 at 234.957 kb on + strand, within Atu0234 at 235.023 kb on + strand, within Atu0234 at 235.203 kb on - strand at 235.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 232,252 + Atu0231 0.24 -1.6 232,273 - Atu0231 0.27 -0.3 232,273 - Atu0231 0.27 +0.7 232,293 - Atu0231 0.30 +0.5 232,306 + Atu0231 0.32 -1.3 232,331 - Atu0231 0.36 +0.5 232,334 + Atu0231 0.36 +1.1 232,401 + Atu0231 0.46 -3.2 232,434 - Atu0231 0.51 +1.3 232,434 - Atu0231 0.51 -1.1 232,541 + Atu0231 0.67 +0.5 232,727 + -0.0 232,744 + -0.1 232,884 - Atu0232 0.16 -0.4 232,902 + Atu0232 0.26 +1.0 232,952 - Atu0232 0.52 -0.9 232,953 - Atu0232 0.53 +1.0 232,953 - Atu0232 0.53 -2.9 232,953 - Atu0232 0.53 -1.1 232,965 - Atu0232 0.59 +0.3 232,965 - Atu0232 0.59 -0.9 233,013 + Atu0232 0.85 +0.6 233,021 - Atu0232 0.89 +0.8 233,200 - +1.3 233,210 + -0.3 233,258 - -0.1 233,388 + Atu0233 0.15 -0.2 233,429 - Atu0233 0.19 +1.4 233,432 + Atu0233 0.19 +0.2 233,448 + Atu0233 0.20 -0.3 233,486 - Atu0233 0.24 -1.6 233,619 + Atu0233 0.36 +1.2 233,654 + Atu0233 0.39 -2.3 233,708 + Atu0233 0.44 -1.0 233,708 + Atu0233 0.44 +1.1 233,708 - Atu0233 0.44 +1.2 233,716 - Atu0233 0.45 -3.7 233,730 + Atu0233 0.46 -0.3 233,734 + Atu0233 0.46 -0.9 233,734 + Atu0233 0.46 +0.2 233,742 - Atu0233 0.47 +0.7 233,752 - Atu0233 0.48 -0.3 233,830 + Atu0233 0.55 -0.8 233,897 - Atu0233 0.61 -0.8 233,999 + Atu0233 0.71 +0.0 234,063 + Atu0233 0.76 -0.4 234,063 + Atu0233 0.76 -0.6 234,169 - Atu0233 0.86 -1.9 234,181 + Atu0233 0.87 -1.0 234,366 - -1.1 234,374 - -1.0 234,390 - +0.7 234,426 + Atu0234 0.12 +0.3 234,443 + Atu0234 0.13 +0.1 234,489 - Atu0234 0.19 -1.4 234,669 + Atu0234 0.39 -0.4 234,689 - Atu0234 0.42 +0.8 234,939 + Atu0234 0.70 -0.5 234,957 + Atu0234 0.72 +2.0 235,023 + Atu0234 0.80 +0.7 235,203 - -0.7 235,214 - -0.5
Or see this region's nucleotide sequence