Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6155 and Atu6156 are separated by 21 nucleotides Atu6156 and Atu6157 are separated by 43 nucleotides Atu6157 and Atu6158 are separated by 40 nucleotides Atu6158 and Atu6159 are separated by 129 nucleotides Atu6159 and Atu6160 are separated by 169 nucleotides
Atu6155: Atu6155 - conserved hypothetical protein, at 173,878 to 174,306
Atu6155
Atu6156: Atu6156 - virA/G regulated gene, at 174,328 to 174,762
Atu6156
Atu6157: Atu6157 - conserved hypothetical protein, at 174,806 to 175,120
Atu6157
Atu6158: Atu6158 - conserved hypothetical protein, at 175,161 to 175,481
Atu6158
Atu6159: Atu6159 - hypothetical protein, at 175,611 to 175,895
Atu6159
Atu6160: Atu6160 - conserved hypothetical protein, at 176,065 to 176,244
Atu6160
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.813 kb on + strand at 173.859 kb on - strand at 173.878 kb on + strand at 173.885 kb on - strand at 173.926 kb on + strand, within Atu6155 at 173.926 kb on + strand, within Atu6155 at 173.934 kb on - strand, within Atu6155 at 173.936 kb on + strand, within Atu6155 at 173.944 kb on - strand, within Atu6155 at 173.974 kb on + strand, within Atu6155 at 173.999 kb on - strand, within Atu6155 at 174.038 kb on - strand, within Atu6155 at 174.045 kb on - strand, within Atu6155 at 174.047 kb on - strand, within Atu6155 at 174.088 kb on - strand, within Atu6155 at 174.107 kb on + strand, within Atu6155 at 174.115 kb on + strand, within Atu6155 at 174.176 kb on + strand, within Atu6155 at 174.207 kb on + strand, within Atu6155 at 174.213 kb on + strand, within Atu6155 at 174.224 kb on + strand, within Atu6155 at 174.249 kb on + strand, within Atu6155 at 174.290 kb on + strand at 174.373 kb on + strand, within Atu6156 at 174.492 kb on + strand, within Atu6156 at 174.502 kb on - strand, within Atu6156 at 174.551 kb on + strand, within Atu6156 at 174.577 kb on + strand, within Atu6156 at 174.663 kb on + strand, within Atu6156 at 174.671 kb on - strand, within Atu6156 at 174.673 kb on + strand, within Atu6156 at 174.703 kb on + strand, within Atu6156 at 174.715 kb on + strand, within Atu6156 at 174.715 kb on + strand, within Atu6156 at 174.715 kb on + strand, within Atu6156 at 174.715 kb on + strand, within Atu6156 at 174.715 kb on + strand, within Atu6156 at 174.723 kb on - strand at 174.723 kb on - strand at 174.723 kb on - strand at 174.723 kb on - strand at 174.723 kb on - strand at 174.742 kb on - strand at 174.775 kb on + strand at 174.781 kb on - strand at 174.798 kb on + strand at 174.798 kb on + strand at 174.798 kb on + strand at 174.806 kb on - strand at 174.806 kb on - strand at 174.806 kb on - strand at 174.806 kb on - strand at 174.806 kb on - strand at 174.852 kb on + strand, within Atu6157 at 174.915 kb on - strand, within Atu6157 at 174.918 kb on + strand, within Atu6157 at 175.112 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.161 kb on - strand at 175.184 kb on + strand at 175.192 kb on - strand at 175.235 kb on + strand, within Atu6158 at 175.235 kb on + strand, within Atu6158 at 175.235 kb on + strand, within Atu6158 at 175.235 kb on + strand, within Atu6158 at 175.243 kb on - strand, within Atu6158 at 175.262 kb on - strand, within Atu6158 at 175.279 kb on + strand, within Atu6158 at 175.292 kb on + strand, within Atu6158 at 175.345 kb on - strand, within Atu6158 at 175.392 kb on - strand, within Atu6158 at 175.436 kb on - strand, within Atu6158 at 175.474 kb on - strand at 175.474 kb on - strand at 175.476 kb on - strand at 175.516 kb on + strand at 175.568 kb on - strand at 175.572 kb on + strand at 175.604 kb on - strand at 175.617 kb on + strand at 175.625 kb on - strand at 175.696 kb on - strand, within Atu6159 at 175.749 kb on - strand, within Atu6159 at 175.762 kb on - strand, within Atu6159 at 175.775 kb on - strand, within Atu6159 at 175.812 kb on + strand, within Atu6159 at 175.820 kb on - strand, within Atu6159 at 175.843 kb on - strand, within Atu6159 at 175.973 kb on + strand at 175.981 kb on - strand at 175.982 kb on - strand at 175.998 kb on - strand at 176.002 kb on - strand at 176.048 kb on - strand at 176.064 kb on - strand at 176.064 kb on - strand at 176.095 kb on - strand, within Atu6160 at 176.101 kb on - strand, within Atu6160 at 176.101 kb on - strand, within Atu6160 at 176.120 kb on + strand, within Atu6160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 173,813 + -0.6 173,859 - -3.1 173,878 + +1.3 173,885 - -0.9 173,926 + Atu6155 0.11 -0.3 173,926 + Atu6155 0.11 -0.7 173,934 - Atu6155 0.13 +0.0 173,936 + Atu6155 0.14 +0.4 173,944 - Atu6155 0.15 +0.3 173,974 + Atu6155 0.22 -1.9 173,999 - Atu6155 0.28 +0.2 174,038 - Atu6155 0.37 -0.5 174,045 - Atu6155 0.39 -1.7 174,047 - Atu6155 0.39 +0.8 174,088 - Atu6155 0.49 -0.0 174,107 + Atu6155 0.53 +1.3 174,115 + Atu6155 0.55 -0.3 174,176 + Atu6155 0.69 -0.4 174,207 + Atu6155 0.77 -0.0 174,213 + Atu6155 0.78 -0.7 174,224 + Atu6155 0.81 +0.3 174,249 + Atu6155 0.86 -1.5 174,290 + -0.2 174,373 + Atu6156 0.10 +0.3 174,492 + Atu6156 0.38 -2.8 174,502 - Atu6156 0.40 -1.4 174,551 + Atu6156 0.51 +1.4 174,577 + Atu6156 0.57 +2.8 174,663 + Atu6156 0.77 -0.5 174,671 - Atu6156 0.79 -0.8 174,673 + Atu6156 0.79 -0.8 174,703 + Atu6156 0.86 -0.7 174,715 + Atu6156 0.89 +0.1 174,715 + Atu6156 0.89 +0.4 174,715 + Atu6156 0.89 -0.2 174,715 + Atu6156 0.89 -1.8 174,715 + Atu6156 0.89 +0.5 174,723 - -0.2 174,723 - -1.7 174,723 - -0.3 174,723 - +1.1 174,723 - +0.2 174,742 - +0.3 174,775 + +1.6 174,781 - +0.5 174,798 + -0.4 174,798 + -0.5 174,798 + -0.6 174,806 - +1.3 174,806 - -1.8 174,806 - -0.4 174,806 - -0.5 174,806 - +0.3 174,852 + Atu6157 0.15 -0.4 174,915 - Atu6157 0.35 +0.8 174,918 + Atu6157 0.36 -0.3 175,112 - -0.8 175,122 - -1.1 175,122 - +0.6 175,161 - -2.4 175,184 + -1.6 175,192 - -0.8 175,235 + Atu6158 0.23 -1.7 175,235 + Atu6158 0.23 +1.4 175,235 + Atu6158 0.23 +0.5 175,235 + Atu6158 0.23 -0.1 175,243 - Atu6158 0.26 -0.0 175,262 - Atu6158 0.31 +1.4 175,279 + Atu6158 0.37 -0.9 175,292 + Atu6158 0.41 +0.5 175,345 - Atu6158 0.57 +1.3 175,392 - Atu6158 0.72 -0.6 175,436 - Atu6158 0.86 +0.8 175,474 - -0.1 175,474 - -1.6 175,476 - -0.3 175,516 + -0.2 175,568 - -0.4 175,572 + +0.6 175,604 - -0.7 175,617 + +1.7 175,625 - -1.1 175,696 - Atu6159 0.30 -0.1 175,749 - Atu6159 0.48 +0.3 175,762 - Atu6159 0.53 -2.4 175,775 - Atu6159 0.58 -1.2 175,812 + Atu6159 0.71 +0.0 175,820 - Atu6159 0.73 -2.2 175,843 - Atu6159 0.81 -1.3 175,973 + -0.0 175,981 - +1.3 175,982 - -0.1 175,998 - -0.1 176,002 - -0.1 176,048 - -0.4 176,064 - -2.6 176,064 - -0.1 176,095 - Atu6160 0.17 -1.0 176,101 - Atu6160 0.20 +1.1 176,101 - Atu6160 0.20 -0.3 176,120 + Atu6160 0.31 +1.1
Or see this region's nucleotide sequence