Strain Fitness in Agrobacterium fabrum C58 around Atu6004

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6003 and Atu8061 are separated by 262 nucleotidesAtu8061 and Atu6004 are separated by 178 nucleotidesAtu6004 and Atu6005 are separated by 478 nucleotides Atu6003: Atu6003 - C, at 6,139 to 6,870 Atu6003 Atu8061: Atu8061 - hypothetical protein, at 7,133 to 7,399 Atu8061 Atu6004: Atu6004 - D protein, at 7,578 to 8,273 Atu6004 Atu6005: Atu6005 - E protein, at 8,752 to 9,696 Atu6005 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6.585 kb on + strand, within Atu6003at 6.588 kb on + strand, within Atu6003at 6.603 kb on - strand, within Atu6003at 6.608 kb on - strand, within Atu6003at 6.610 kb on - strand, within Atu6003at 6.628 kb on - strand, within Atu6003at 6.645 kb on - strand, within Atu6003at 6.725 kb on + strand, within Atu6003at 6.837 kb on - strandat 6.847 kb on + strandat 6.855 kb on - strandat 7.105 kb on + strandat 7.162 kb on - strand, within Atu8061at 7.210 kb on + strand, within Atu8061at 7.232 kb on + strand, within Atu8061at 7.286 kb on + strand, within Atu8061at 7.294 kb on - strand, within Atu8061at 7.323 kb on + strand, within Atu8061at 7.339 kb on + strand, within Atu8061at 7.380 kb on - strandat 7.529 kb on - strandat 7.552 kb on - strandat 7.554 kb on + strandat 7.554 kb on + strandat 7.562 kb on - strandat 7.562 kb on - strandat 7.562 kb on - strandat 7.564 kb on - strandat 7.610 kb on + strandat 7.634 kb on - strandat 7.643 kb on + strandat 7.648 kb on + strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.663 kb on + strand, within Atu6004at 7.668 kb on + strand, within Atu6004at 7.671 kb on - strand, within Atu6004at 7.676 kb on - strand, within Atu6004at 7.692 kb on + strand, within Atu6004at 7.692 kb on + strand, within Atu6004at 7.707 kb on - strand, within Atu6004at 7.724 kb on + strand, within Atu6004at 7.740 kb on + strand, within Atu6004at 7.757 kb on - strand, within Atu6004at 7.761 kb on + strand, within Atu6004at 7.762 kb on - strand, within Atu6004at 7.784 kb on + strand, within Atu6004at 7.792 kb on + strand, within Atu6004at 7.800 kb on + strand, within Atu6004at 7.800 kb on + strand, within Atu6004at 7.810 kb on + strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.824 kb on - strand, within Atu6004at 7.824 kb on - strand, within Atu6004at 7.857 kb on - strand, within Atu6004at 7.946 kb on - strand, within Atu6004at 7.946 kb on - strand, within Atu6004at 7.958 kb on - strand, within Atu6004at 7.958 kb on - strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.976 kb on - strand, within Atu6004at 7.985 kb on + strand, within Atu6004at 7.996 kb on + strand, within Atu6004at 8.018 kb on - strand, within Atu6004at 8.037 kb on + strand, within Atu6004at 8.061 kb on + strand, within Atu6004at 8.064 kb on - strand, within Atu6004at 8.095 kb on - strand, within Atu6004at 8.116 kb on + strand, within Atu6004at 8.124 kb on + strand, within Atu6004at 8.124 kb on - strand, within Atu6004at 8.144 kb on + strand, within Atu6004at 8.184 kb on + strand, within Atu6004at 8.184 kb on + strand, within Atu6004at 8.192 kb on - strand, within Atu6004at 8.266 kb on + strandat 8.399 kb on + strandat 8.407 kb on - strandat 8.432 kb on - strandat 8.689 kb on - strandat 8.704 kb on - strandat 8.710 kb on - strandat 8.734 kb on - strandat 8.757 kb on + strandat 8.767 kb on + strandat 8.767 kb on + strandat 8.797 kb on - strandat 8.810 kb on + strandat 8.992 kb on + strand, within Atu6005at 8.992 kb on + strand, within Atu6005at 9.000 kb on - strand, within Atu6005at 9.074 kb on + strand, within Atu6005at 9.074 kb on + strand, within Atu6005at 9.075 kb on - strand, within Atu6005at 9.084 kb on + strand, within Atu6005at 9.131 kb on + strand, within Atu6005at 9.131 kb on + strand, within Atu6005at 9.139 kb on - strand, within Atu6005

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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6,585 + Atu6003 0.61 -0.4
6,588 + Atu6003 0.61 -0.9
6,603 - Atu6003 0.63 -0.3
6,608 - Atu6003 0.64 -0.7
6,610 - Atu6003 0.64 -0.8
6,628 - Atu6003 0.67 +0.1
6,645 - Atu6003 0.69 +0.0
6,725 + Atu6003 0.80 -1.8
6,837 - -0.9
6,847 + -2.4
6,855 - +0.9
7,105 + +1.0
7,162 - Atu8061 0.11 -0.9
7,210 + Atu8061 0.29 -0.3
7,232 + Atu8061 0.37 -0.0
7,286 + Atu8061 0.57 -0.6
7,294 - Atu8061 0.60 -1.4
7,323 + Atu8061 0.71 -1.5
7,339 + Atu8061 0.77 -1.7
7,380 - +0.5
7,529 - +0.8
7,552 - +0.2
7,554 + +2.0
7,554 + +1.2
7,562 - +0.7
7,562 - -0.6
7,562 - +0.6
7,564 - -0.2
7,610 + +0.7
7,634 - -3.4
7,643 + -0.4
7,648 + Atu6004 0.10 +1.1
7,651 - Atu6004 0.10 -0.6
7,651 - Atu6004 0.10 +1.1
7,651 - Atu6004 0.10 +0.0
7,658 + Atu6004 0.11 +1.7
7,658 + Atu6004 0.11 -0.4
7,658 + Atu6004 0.11 +0.8
7,663 + Atu6004 0.12 +1.8
7,668 + Atu6004 0.13 -0.5
7,671 - Atu6004 0.13 +0.1
7,676 - Atu6004 0.14 -2.5
7,692 + Atu6004 0.16 +1.3
7,692 + Atu6004 0.16 -0.6
7,707 - Atu6004 0.19 +1.3
7,724 + Atu6004 0.21 +1.3
7,740 + Atu6004 0.23 -0.9
7,757 - Atu6004 0.26 +0.4
7,761 + Atu6004 0.26 -3.0
7,762 - Atu6004 0.26 -0.0
7,784 + Atu6004 0.30 -0.4
7,792 + Atu6004 0.31 +0.2
7,800 + Atu6004 0.32 +0.3
7,800 + Atu6004 0.32 -1.9
7,810 + Atu6004 0.33 -0.5
7,818 - Atu6004 0.34 -0.1
7,818 - Atu6004 0.34 +2.0
7,818 - Atu6004 0.34 -1.0
7,818 - Atu6004 0.34 +0.2
7,818 - Atu6004 0.34 +1.3
7,824 - Atu6004 0.35 +0.3
7,824 - Atu6004 0.35 +1.1
7,857 - Atu6004 0.40 -2.9
7,946 - Atu6004 0.53 -1.6
7,946 - Atu6004 0.53 +0.9
7,958 - Atu6004 0.55 +0.4
7,958 - Atu6004 0.55 +0.0
7,968 + Atu6004 0.56 -1.6
7,968 + Atu6004 0.56 -0.5
7,968 + Atu6004 0.56 -0.3
7,976 - Atu6004 0.57 -0.1
7,985 + Atu6004 0.58 -1.0
7,996 + Atu6004 0.60 -1.5
8,018 - Atu6004 0.63 +0.1
8,037 + Atu6004 0.66 -1.0
8,061 + Atu6004 0.69 -0.2
8,064 - Atu6004 0.70 +0.3
8,095 - Atu6004 0.74 +0.4
8,116 + Atu6004 0.77 +0.2
8,124 + Atu6004 0.78 +0.0
8,124 - Atu6004 0.78 +1.1
8,144 + Atu6004 0.81 -0.2
8,184 + Atu6004 0.87 +0.6
8,184 + Atu6004 0.87 +0.2
8,192 - Atu6004 0.88 -1.8
8,266 + +0.4
8,399 + -2.4
8,407 - +0.1
8,432 - -1.8
8,689 - -0.3
8,704 - -0.7
8,710 - -1.4
8,734 - +4.2
8,757 + +0.4
8,767 + -1.2
8,767 + +0.3
8,797 - +1.7
8,810 + +1.4
8,992 + Atu6005 0.25 +0.0
8,992 + Atu6005 0.25 -1.6
9,000 - Atu6005 0.26 +0.5
9,074 + Atu6005 0.34 +0.1
9,074 + Atu6005 0.34 -1.0
9,075 - Atu6005 0.34 -0.5
9,084 + Atu6005 0.35 -1.9
9,131 + Atu6005 0.40 -0.3
9,131 + Atu6005 0.40 +0.2
9,139 - Atu6005 0.41 +1.3

Or see this region's nucleotide sequence