Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5453 and Atu5454 overlap by 11 nucleotides Atu5454 and Atu5455 are separated by 23 nucleotides Atu5455 and Atu5456 are separated by 47 nucleotides
Atu5453: Atu5453 - ABC transporter membrane spanning protein, at 444,203 to 446,611
Atu5453
Atu5454: Atu5454 - hypothetical protein, at 446,601 to 447,665
Atu5454
Atu5455: Atu5455 - hypothetical protein, at 447,689 to 448,336
Atu5455
Atu5456: Atu5456 - hypothetical protein, at 448,384 to 449,295
Atu5456
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 445.604 kb on - strand, within Atu5453 at 445.668 kb on - strand, within Atu5453 at 445.692 kb on - strand, within Atu5453 at 445.700 kb on - strand, within Atu5453 at 445.897 kb on + strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 446.059 kb on + strand, within Atu5453 at 446.061 kb on + strand, within Atu5453 at 446.204 kb on - strand, within Atu5453 at 446.206 kb on + strand, within Atu5453 at 446.218 kb on + strand, within Atu5453 at 446.352 kb on - strand, within Atu5453 at 446.406 kb on + strand at 446.411 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.424 kb on - strand at 446.424 kb on - strand at 446.437 kb on + strand at 446.584 kb on + strand at 446.592 kb on - strand at 446.625 kb on - strand at 446.669 kb on + strand at 446.708 kb on - strand, within Atu5454 at 446.780 kb on - strand, within Atu5454 at 446.804 kb on - strand, within Atu5454 at 446.894 kb on + strand, within Atu5454 at 446.904 kb on + strand, within Atu5454 at 446.941 kb on - strand, within Atu5454 at 446.958 kb on - strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 447.037 kb on + strand, within Atu5454 at 447.068 kb on - strand, within Atu5454 at 447.084 kb on + strand, within Atu5454 at 447.119 kb on - strand, within Atu5454 at 447.128 kb on + strand, within Atu5454 at 447.271 kb on - strand, within Atu5454 at 447.286 kb on - strand, within Atu5454 at 447.314 kb on - strand, within Atu5454 at 447.333 kb on - strand, within Atu5454 at 447.381 kb on + strand, within Atu5454 at 447.488 kb on - strand, within Atu5454 at 447.501 kb on - strand, within Atu5454 at 447.569 kb on + strand at 447.603 kb on - strand at 447.692 kb on - strand at 447.702 kb on - strand at 447.730 kb on - strand at 447.732 kb on + strand at 447.732 kb on + strand at 447.778 kb on + strand, within Atu5455 at 447.830 kb on - strand, within Atu5455 at 447.852 kb on - strand, within Atu5455 at 447.944 kb on - strand, within Atu5455 at 447.959 kb on + strand, within Atu5455 at 447.967 kb on - strand, within Atu5455 at 447.976 kb on - strand, within Atu5455 at 448.011 kb on - strand, within Atu5455 at 448.013 kb on - strand, within Atu5455 at 448.055 kb on + strand, within Atu5455 at 448.197 kb on + strand, within Atu5455 at 448.374 kb on - strand at 448.399 kb on + strand at 448.514 kb on + strand, within Atu5456 at 448.550 kb on + strand, within Atu5456 at 448.550 kb on + strand, within Atu5456 at 448.551 kb on - strand, within Atu5456 at 448.584 kb on + strand, within Atu5456 at 448.599 kb on - strand, within Atu5456
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 445,604 - Atu5453 0.58 -0.1 445,668 - Atu5453 0.61 +0.3 445,692 - Atu5453 0.62 -0.2 445,700 - Atu5453 0.62 +0.0 445,897 + Atu5453 0.70 +0.1 445,905 - Atu5453 0.71 -1.1 445,905 - Atu5453 0.71 +1.1 446,059 + Atu5453 0.77 -0.1 446,061 + Atu5453 0.77 -2.4 446,204 - Atu5453 0.83 +0.1 446,206 + Atu5453 0.83 +1.5 446,218 + Atu5453 0.84 -0.7 446,352 - Atu5453 0.89 -0.3 446,406 + +0.4 446,411 + +1.7 446,416 + -1.1 446,416 + -0.1 446,416 + +3.2 446,424 - +0.7 446,424 - -1.7 446,437 + -1.3 446,584 + -0.9 446,592 - -0.4 446,625 - +0.0 446,669 + +0.6 446,708 - Atu5454 0.10 +4.3 446,780 - Atu5454 0.17 -0.0 446,804 - Atu5454 0.19 +1.2 446,894 + Atu5454 0.28 +0.7 446,904 + Atu5454 0.28 -1.2 446,941 - Atu5454 0.32 -1.3 446,958 - Atu5454 0.34 -0.6 446,965 + Atu5454 0.34 -0.5 446,965 + Atu5454 0.34 +0.2 446,965 + Atu5454 0.34 -2.1 447,037 + Atu5454 0.41 +0.7 447,068 - Atu5454 0.44 +0.2 447,084 + Atu5454 0.45 -1.4 447,119 - Atu5454 0.49 +2.3 447,128 + Atu5454 0.49 -0.2 447,271 - Atu5454 0.63 -3.1 447,286 - Atu5454 0.64 +0.4 447,314 - Atu5454 0.67 +2.2 447,333 - Atu5454 0.69 +1.6 447,381 + Atu5454 0.73 +0.8 447,488 - Atu5454 0.83 +2.2 447,501 - Atu5454 0.85 +1.4 447,569 + +1.1 447,603 - -0.5 447,692 - +0.7 447,702 - -0.8 447,730 - -0.5 447,732 + -1.7 447,732 + +0.7 447,778 + Atu5455 0.14 -0.9 447,830 - Atu5455 0.22 +1.6 447,852 - Atu5455 0.25 -0.7 447,944 - Atu5455 0.39 -0.3 447,959 + Atu5455 0.42 -1.5 447,967 - Atu5455 0.43 +0.8 447,976 - Atu5455 0.44 -0.1 448,011 - Atu5455 0.50 +1.2 448,013 - Atu5455 0.50 +1.1 448,055 + Atu5455 0.56 +0.6 448,197 + Atu5455 0.78 -0.3 448,374 - +0.5 448,399 + -0.5 448,514 + Atu5456 0.14 +0.6 448,550 + Atu5456 0.18 -1.0 448,550 + Atu5456 0.18 +2.4 448,551 - Atu5456 0.18 +1.0 448,584 + Atu5456 0.22 -0.9 448,599 - Atu5456 0.24 -0.2
Or see this region's nucleotide sequence