Strain Fitness in Agrobacterium fabrum C58 around Atu5125

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5124 and Atu5125 are separated by 114 nucleotidesAtu5125 and Atu5126 are separated by 205 nucleotides Atu5124: Atu5124 - glutamate-1-semialdehyde aminotransferase, at 130,916 to 132,250 Atu5124 Atu5125: Atu5125 - GntR family transcriptional regulator, at 132,365 to 133,054 Atu5125 Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372 Atu5126 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 131.383 kb on + strand, within Atu5124at 131.389 kb on - strand, within Atu5124at 131.429 kb on - strand, within Atu5124at 131.449 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.549 kb on + strand, within Atu5124at 131.567 kb on + strand, within Atu5124at 131.569 kb on + strand, within Atu5124at 131.577 kb on - strand, within Atu5124at 131.579 kb on - strand, within Atu5124at 131.590 kb on + strand, within Atu5124at 131.590 kb on - strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.881 kb on + strand, within Atu5124at 131.894 kb on + strand, within Atu5124at 131.974 kb on - strand, within Atu5124at 131.984 kb on - strand, within Atu5124at 131.984 kb on - strand, within Atu5124at 132.011 kb on - strand, within Atu5124at 132.121 kb on + strandat 132.144 kb on - strandat 132.148 kb on + strandat 132.525 kb on + strand, within Atu5125at 132.533 kb on - strand, within Atu5125at 132.533 kb on - strand, within Atu5125at 132.541 kb on + strand, within Atu5125at 132.549 kb on - strand, within Atu5125at 132.565 kb on + strand, within Atu5125at 132.786 kb on - strand, within Atu5125at 132.834 kb on - strand, within Atu5125at 132.877 kb on - strand, within Atu5125at 132.892 kb on - strand, within Atu5125at 132.899 kb on + strand, within Atu5125at 132.920 kb on + strand, within Atu5125at 132.966 kb on + strand, within Atu5125at 133.009 kb on + strandat 133.036 kb on - strandat 133.218 kb on - strandat 133.281 kb on + strandat 133.281 kb on - strandat 133.360 kb on + strandat 133.365 kb on + strandat 133.373 kb on - strand, within Atu5126at 133.378 kb on - strand, within Atu5126at 133.378 kb on - strand, within Atu5126at 133.386 kb on + strand, within Atu5126at 133.394 kb on - strand, within Atu5126at 133.449 kb on - strand, within Atu5126at 133.539 kb on - strand, within Atu5126at 133.586 kb on - strand, within Atu5126at 133.657 kb on + strand, within Atu5126at 133.675 kb on + strand, within Atu5126at 133.711 kb on + strand, within Atu5126at 133.711 kb on + strand, within Atu5126at 133.782 kb on - strand, within Atu5126at 133.784 kb on - strand, within Atu5126at 133.801 kb on + strand, within Atu5126at 133.801 kb on + strand, within Atu5126at 133.809 kb on - strand, within Atu5126at 133.811 kb on + strand, within Atu5126at 133.811 kb on + strand, within Atu5126at 133.819 kb on - strand, within Atu5126at 133.826 kb on + strand, within Atu5126at 133.859 kb on + strand, within Atu5126at 133.879 kb on + strand, within Atu5126at 133.879 kb on + strand, within Atu5126at 133.891 kb on + strand, within Atu5126at 133.909 kb on - strand, within Atu5126at 133.932 kb on - strand, within Atu5126

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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131,383 + Atu5124 0.35 -0.2
131,389 - Atu5124 0.35 -0.5
131,429 - Atu5124 0.38 -0.0
131,449 - Atu5124 0.40 -2.1
131,506 - Atu5124 0.44 -0.8
131,506 - Atu5124 0.44 +0.5
131,506 - Atu5124 0.44 -0.5
131,549 + Atu5124 0.47 -1.2
131,567 + Atu5124 0.49 -1.4
131,569 + Atu5124 0.49 +3.1
131,577 - Atu5124 0.50 -0.3
131,579 - Atu5124 0.50 +1.0
131,590 + Atu5124 0.50 -0.0
131,590 - Atu5124 0.50 -0.8
131,777 + Atu5124 0.64 +0.2
131,777 + Atu5124 0.64 -2.2
131,777 + Atu5124 0.64 -0.8
131,777 + Atu5124 0.64 -2.2
131,785 - Atu5124 0.65 -0.3
131,785 - Atu5124 0.65 -0.7
131,785 - Atu5124 0.65 -0.5
131,785 - Atu5124 0.65 +0.2
131,785 - Atu5124 0.65 -1.4
131,799 + Atu5124 0.66 -1.2
131,799 + Atu5124 0.66 +0.6
131,799 + Atu5124 0.66 -0.3
131,799 + Atu5124 0.66 -1.3
131,807 - Atu5124 0.67 +0.4
131,807 - Atu5124 0.67 -0.3
131,807 - Atu5124 0.67 -2.1
131,807 - Atu5124 0.67 -1.7
131,881 + Atu5124 0.72 +1.9
131,894 + Atu5124 0.73 -2.1
131,974 - Atu5124 0.79 -1.0
131,984 - Atu5124 0.80 -1.2
131,984 - Atu5124 0.80 +0.2
132,011 - Atu5124 0.82 +0.1
132,121 + -0.2
132,144 - -1.0
132,148 + -3.3
132,525 + Atu5125 0.23 -2.6
132,533 - Atu5125 0.24 -1.1
132,533 - Atu5125 0.24 -1.7
132,541 + Atu5125 0.26 -0.4
132,549 - Atu5125 0.27 -0.8
132,565 + Atu5125 0.29 -1.2
132,786 - Atu5125 0.61 +0.8
132,834 - Atu5125 0.68 -0.1
132,877 - Atu5125 0.74 -0.6
132,892 - Atu5125 0.76 +1.0
132,899 + Atu5125 0.77 -0.4
132,920 + Atu5125 0.80 +1.6
132,966 + Atu5125 0.87 -1.8
133,009 + +1.4
133,036 - +0.6
133,218 - -0.4
133,281 + -0.2
133,281 - +1.0
133,360 + -0.1
133,365 + +0.5
133,373 - Atu5126 0.10 +0.7
133,378 - Atu5126 0.11 +0.6
133,378 - Atu5126 0.11 +1.2
133,386 + Atu5126 0.11 -0.7
133,394 - Atu5126 0.12 +0.3
133,449 - Atu5126 0.17 +1.1
133,539 - Atu5126 0.25 +1.2
133,586 - Atu5126 0.29 -0.6
133,657 + Atu5126 0.36 +0.7
133,675 + Atu5126 0.37 -0.2
133,711 + Atu5126 0.41 -0.1
133,711 + Atu5126 0.41 +0.1
133,782 - Atu5126 0.47 -1.5
133,784 - Atu5126 0.47 +0.6
133,801 + Atu5126 0.49 -0.6
133,801 + Atu5126 0.49 +1.5
133,809 - Atu5126 0.49 +0.3
133,811 + Atu5126 0.50 +1.6
133,811 + Atu5126 0.50 -0.3
133,819 - Atu5126 0.50 +0.1
133,826 + Atu5126 0.51 -2.0
133,859 + Atu5126 0.54 -1.1
133,879 + Atu5126 0.56 +1.2
133,879 + Atu5126 0.56 +0.2
133,891 + Atu5126 0.57 -1.2
133,909 - Atu5126 0.58 -0.4
133,932 - Atu5126 0.60 +0.7

Or see this region's nucleotide sequence