Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3681 and Atu3682 overlap by 4 nucleotides Atu3682 and Atu3683 are separated by 11 nucleotides
Atu3681: Atu3681 - polyketide synthase, at 738,077 to 742,510
Atu3681
Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706
Atu3682
Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409
Atu3683
Position (kb) 742
743
744
745
746
747
748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 741.575 kb on - strand, within Atu3681 at 741.575 kb on - strand, within Atu3681 at 741.624 kb on - strand, within Atu3681 at 741.865 kb on + strand, within Atu3681 at 741.873 kb on + strand, within Atu3681 at 741.906 kb on + strand, within Atu3681 at 741.914 kb on + strand, within Atu3681 at 742.088 kb on - strand at 742.253 kb on - strand at 742.312 kb on + strand at 742.384 kb on - strand at 742.468 kb on - strand at 742.544 kb on - strand at 742.595 kb on - strand at 742.597 kb on + strand at 742.645 kb on + strand at 742.645 kb on + strand at 742.653 kb on - strand at 742.653 kb on - strand at 742.653 kb on - strand at 742.713 kb on - strand at 742.749 kb on - strand at 742.921 kb on + strand at 742.929 kb on - strand at 742.960 kb on - strand at 743.031 kb on + strand at 743.055 kb on + strand at 743.082 kb on + strand at 743.102 kb on + strand at 743.105 kb on - strand at 743.105 kb on - strand at 743.105 kb on - strand at 743.116 kb on - strand at 743.168 kb on + strand at 743.228 kb on + strand, within Atu3682 at 743.242 kb on + strand, within Atu3682 at 743.242 kb on + strand, within Atu3682 at 743.250 kb on + strand, within Atu3682 at 743.250 kb on - strand, within Atu3682 at 743.250 kb on - strand, within Atu3682 at 743.327 kb on + strand, within Atu3682 at 743.333 kb on - strand, within Atu3682 at 743.345 kb on - strand, within Atu3682 at 743.445 kb on - strand, within Atu3682 at 743.468 kb on + strand, within Atu3682 at 743.552 kb on + strand, within Atu3682 at 743.990 kb on + strand, within Atu3682 at 744.036 kb on + strand, within Atu3682 at 744.156 kb on + strand, within Atu3682 at 744.196 kb on - strand, within Atu3682 at 744.259 kb on - strand, within Atu3682 at 744.263 kb on - strand, within Atu3682 at 744.362 kb on + strand, within Atu3682 at 744.370 kb on + strand, within Atu3682 at 744.370 kb on - strand, within Atu3682 at 744.418 kb on - strand, within Atu3682 at 744.433 kb on - strand, within Atu3682 at 744.454 kb on - strand, within Atu3682 at 744.565 kb on + strand, within Atu3682 at 744.620 kb on - strand, within Atu3682 at 744.631 kb on + strand, within Atu3682 at 744.636 kb on + strand, within Atu3682 at 744.644 kb on - strand, within Atu3682 at 744.644 kb on - strand, within Atu3682 at 744.644 kb on - strand, within Atu3682 at 744.690 kb on + strand, within Atu3682 at 744.690 kb on + strand, within Atu3682 at 744.698 kb on - strand, within Atu3682 at 744.785 kb on + strand, within Atu3682 at 744.849 kb on - strand, within Atu3682 at 744.941 kb on - strand, within Atu3682 at 745.033 kb on + strand, within Atu3682 at 745.043 kb on + strand, within Atu3682 at 745.115 kb on - strand, within Atu3682 at 745.185 kb on + strand, within Atu3682 at 745.322 kb on + strand, within Atu3682 at 745.389 kb on + strand, within Atu3682 at 745.421 kb on + strand, within Atu3682 at 745.561 kb on + strand, within Atu3682 at 745.569 kb on - strand, within Atu3682 at 745.588 kb on + strand, within Atu3682 at 745.635 kb on + strand, within Atu3682 at 745.643 kb on - strand, within Atu3682 at 745.694 kb on + strand, within Atu3682 at 745.759 kb on - strand, within Atu3682 at 745.760 kb on - strand, within Atu3682 at 745.815 kb on - strand, within Atu3682 at 745.841 kb on + strand, within Atu3682 at 746.007 kb on + strand, within Atu3682 at 746.034 kb on + strand, within Atu3682 at 746.135 kb on - strand, within Atu3682 at 746.174 kb on + strand, within Atu3682 at 746.320 kb on + strand, within Atu3682 at 746.345 kb on + strand, within Atu3682 at 746.353 kb on - strand, within Atu3682 at 746.475 kb on + strand, within Atu3682 at 746.536 kb on + strand, within Atu3682 at 746.543 kb on - strand, within Atu3682 at 746.555 kb on + strand, within Atu3682 at 746.592 kb on - strand, within Atu3682 at 746.592 kb on - strand, within Atu3682 at 746.779 kb on + strand, within Atu3682 at 746.800 kb on + strand, within Atu3682 at 746.838 kb on + strand, within Atu3682 at 746.902 kb on + strand, within Atu3682 at 746.910 kb on - strand, within Atu3682 at 746.979 kb on + strand, within Atu3682 at 747.103 kb on + strand, within Atu3682 at 747.103 kb on + strand, within Atu3682 at 747.111 kb on - strand, within Atu3682 at 747.111 kb on - strand, within Atu3682 at 747.111 kb on - strand, within Atu3682 at 747.182 kb on + strand, within Atu3682 at 747.278 kb on - strand, within Atu3682 at 747.328 kb on + strand, within Atu3682 at 747.328 kb on + strand, within Atu3682 at 747.370 kb on + strand, within Atu3682 at 747.476 kb on + strand, within Atu3682 at 747.476 kb on + strand, within Atu3682 at 747.476 kb on + strand, within Atu3682 at 747.484 kb on - strand, within Atu3682 at 747.484 kb on - strand, within Atu3682 at 747.484 kb on - strand, within Atu3682 at 747.600 kb on - strand, within Atu3682 at 747.655 kb on - strand, within Atu3682 at 747.717 kb on - strand, within Atu3682 at 747.758 kb on - strand, within Atu3682 at 747.843 kb on - strand, within Atu3682 at 747.843 kb on - strand, within Atu3682 at 747.847 kb on + strand, within Atu3682 at 747.927 kb on - strand, within Atu3682 at 747.968 kb on + strand, within Atu3682 at 747.976 kb on - strand, within Atu3682 at 747.983 kb on + strand, within Atu3682 at 747.986 kb on - strand, within Atu3682 at 747.991 kb on - strand, within Atu3682 at 747.991 kb on - strand, within Atu3682 at 748.011 kb on - strand, within Atu3682 at 748.011 kb on - strand, within Atu3682 at 748.050 kb on - strand, within Atu3682 at 748.118 kb on - strand, within Atu3682 at 748.324 kb on - strand, within Atu3682 at 748.341 kb on + strand, within Atu3682 at 748.657 kb on + strand, within Atu3682 at 748.662 kb on + strand, within Atu3682 at 748.665 kb on - strand, within Atu3682 at 748.665 kb on - strand, within Atu3682 at 748.665 kb on - strand, within Atu3682 at 748.667 kb on + strand, within Atu3682 at 748.709 kb on + strand, within Atu3682 at 748.748 kb on + strand, within Atu3682 at 748.758 kb on + strand, within Atu3682 at 748.780 kb on + strand, within Atu3682 at 748.962 kb on + strand, within Atu3682 at 748.999 kb on - strand at 749.065 kb on - strand at 749.186 kb on - strand at 749.275 kb on + strand at 749.385 kb on - strand at 749.414 kb on + strand at 749.419 kb on + strand at 749.506 kb on + strand at 749.556 kb on - strand at 749.635 kb on + strand at 749.721 kb on - strand at 749.757 kb on + strand at 749.855 kb on + strand at 749.922 kb on + strand at 749.928 kb on - strand at 749.930 kb on - strand at 749.990 kb on - strand at 750.123 kb on + strand at 750.128 kb on + strand at 750.138 kb on + strand at 750.143 kb on + strand at 750.151 kb on - strand at 750.186 kb on - strand at 750.242 kb on - strand at 750.305 kb on + strand at 750.487 kb on - strand at 750.487 kb on - strand at 750.487 kb on - strand at 750.497 kb on - strand, within Atu3683 at 750.536 kb on + strand, within Atu3683 at 750.555 kb on - strand, within Atu3683 at 750.609 kb on + strand, within Atu3683 at 750.617 kb on - strand, within Atu3683
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 741,575 - Atu3681 0.79 +0.8 741,575 - Atu3681 0.79 +0.1 741,624 - Atu3681 0.80 -0.3 741,865 + Atu3681 0.85 +1.9 741,873 + Atu3681 0.86 +2.3 741,906 + Atu3681 0.86 -0.4 741,914 + Atu3681 0.87 +0.6 742,088 - -1.5 742,253 - +0.8 742,312 + -0.4 742,384 - -2.6 742,468 - -0.9 742,544 - +0.1 742,595 - -0.2 742,597 + +1.0 742,645 + +0.4 742,645 + -0.3 742,653 - +0.5 742,653 - +5.4 742,653 - -0.7 742,713 - -0.2 742,749 - -3.2 742,921 + +0.5 742,929 - -0.2 742,960 - +1.6 743,031 + -1.5 743,055 + +0.4 743,082 + +1.0 743,102 + +1.9 743,105 - +0.4 743,105 - +0.3 743,105 - +0.0 743,116 - -0.9 743,168 + -1.9 743,228 + Atu3682 0.10 +2.1 743,242 + Atu3682 0.10 -1.3 743,242 + Atu3682 0.10 -0.5 743,250 + Atu3682 0.10 +1.2 743,250 - Atu3682 0.10 +2.4 743,250 - Atu3682 0.10 +1.3 743,327 + Atu3682 0.11 -0.6 743,333 - Atu3682 0.11 -0.4 743,345 - Atu3682 0.12 -1.0 743,445 - Atu3682 0.13 -1.1 743,468 + Atu3682 0.13 +1.4 743,552 + Atu3682 0.15 -1.0 743,990 + Atu3682 0.21 +0.4 744,036 + Atu3682 0.21 +3.8 744,156 + Atu3682 0.23 -0.1 744,196 - Atu3682 0.23 +0.2 744,259 - Atu3682 0.24 -0.2 744,263 - Atu3682 0.24 +0.5 744,362 + Atu3682 0.26 +2.0 744,370 + Atu3682 0.26 +0.1 744,370 - Atu3682 0.26 -0.6 744,418 - Atu3682 0.27 -0.1 744,433 - Atu3682 0.27 -0.7 744,454 - Atu3682 0.27 +0.0 744,565 + Atu3682 0.29 -2.7 744,620 - Atu3682 0.29 +0.3 744,631 + Atu3682 0.29 +1.9 744,636 + Atu3682 0.30 -0.2 744,644 - Atu3682 0.30 +0.1 744,644 - Atu3682 0.30 +0.3 744,644 - Atu3682 0.30 -0.7 744,690 + Atu3682 0.30 -1.2 744,690 + Atu3682 0.30 -0.1 744,698 - Atu3682 0.30 +0.2 744,785 + Atu3682 0.32 +0.3 744,849 - Atu3682 0.33 +0.4 744,941 - Atu3682 0.34 -1.1 745,033 + Atu3682 0.35 -0.4 745,043 + Atu3682 0.35 +0.3 745,115 - Atu3682 0.36 -1.0 745,185 + Atu3682 0.37 -0.5 745,322 + Atu3682 0.39 +0.5 745,389 + Atu3682 0.40 +0.3 745,421 + Atu3682 0.40 +1.9 745,561 + Atu3682 0.42 -0.4 745,569 - Atu3682 0.43 +1.6 745,588 + Atu3682 0.43 -0.6 745,635 + Atu3682 0.43 +0.5 745,643 - Atu3682 0.44 +0.3 745,694 + Atu3682 0.44 -1.3 745,759 - Atu3682 0.45 +0.2 745,760 - Atu3682 0.45 +0.4 745,815 - Atu3682 0.46 -0.7 745,841 + Atu3682 0.46 -1.9 746,007 + Atu3682 0.49 +0.8 746,034 + Atu3682 0.49 +1.2 746,135 - Atu3682 0.50 -0.4 746,174 + Atu3682 0.51 -0.4 746,320 + Atu3682 0.53 -0.5 746,345 + Atu3682 0.53 +0.2 746,353 - Atu3682 0.53 +0.4 746,475 + Atu3682 0.55 +0.6 746,536 + Atu3682 0.56 -0.4 746,543 - Atu3682 0.56 -0.3 746,555 + Atu3682 0.56 -0.5 746,592 - Atu3682 0.57 -1.0 746,592 - Atu3682 0.57 -0.3 746,779 + Atu3682 0.59 +0.3 746,800 + Atu3682 0.60 -1.0 746,838 + Atu3682 0.60 -1.2 746,902 + Atu3682 0.61 -0.1 746,910 - Atu3682 0.61 +2.1 746,979 + Atu3682 0.62 +0.2 747,103 + Atu3682 0.64 -0.9 747,103 + Atu3682 0.64 -1.4 747,111 - Atu3682 0.64 -0.6 747,111 - Atu3682 0.64 -0.3 747,111 - Atu3682 0.64 +3.6 747,182 + Atu3682 0.65 +2.8 747,278 - Atu3682 0.66 -1.6 747,328 + Atu3682 0.67 -0.4 747,328 + Atu3682 0.67 -0.5 747,370 + Atu3682 0.68 -0.0 747,476 + Atu3682 0.69 -0.2 747,476 + Atu3682 0.69 +0.0 747,476 + Atu3682 0.69 +0.9 747,484 - Atu3682 0.69 -0.3 747,484 - Atu3682 0.69 +0.1 747,484 - Atu3682 0.69 -0.1 747,600 - Atu3682 0.71 +0.2 747,655 - Atu3682 0.71 -1.1 747,717 - Atu3682 0.72 -0.4 747,758 - Atu3682 0.73 +0.3 747,843 - Atu3682 0.74 +1.3 747,843 - Atu3682 0.74 -0.2 747,847 + Atu3682 0.74 +0.4 747,927 - Atu3682 0.75 +3.5 747,968 + Atu3682 0.76 +0.9 747,976 - Atu3682 0.76 +0.3 747,983 + Atu3682 0.76 -1.8 747,986 - Atu3682 0.76 +0.3 747,991 - Atu3682 0.76 -0.7 747,991 - Atu3682 0.76 -0.7 748,011 - Atu3682 0.76 +0.2 748,011 - Atu3682 0.76 +0.5 748,050 - Atu3682 0.77 +0.4 748,118 - Atu3682 0.78 +1.3 748,324 - Atu3682 0.81 +0.4 748,341 + Atu3682 0.81 -0.3 748,657 + Atu3682 0.85 +1.2 748,662 + Atu3682 0.85 +0.3 748,665 - Atu3682 0.86 -1.4 748,665 - Atu3682 0.86 -0.0 748,665 - Atu3682 0.86 -1.4 748,667 + Atu3682 0.86 +1.0 748,709 + Atu3682 0.86 +1.6 748,748 + Atu3682 0.87 -1.3 748,758 + Atu3682 0.87 +0.1 748,780 + Atu3682 0.87 +1.8 748,962 + Atu3682 0.90 -0.1 748,999 - +0.5 749,065 - +0.9 749,186 - -1.3 749,275 + -0.2 749,385 - -0.4 749,414 + +0.6 749,419 + -0.5 749,506 + -1.1 749,556 - +0.5 749,635 + +0.1 749,721 - -2.8 749,757 + -0.2 749,855 + -0.8 749,922 + +0.5 749,928 - +0.1 749,930 - -2.5 749,990 - +0.4 750,123 + +0.4 750,128 + -1.4 750,138 + -0.3 750,143 + -1.8 750,151 - -1.5 750,186 - +1.0 750,242 - +1.0 750,305 + -0.4 750,487 - +0.1 750,487 - +1.3 750,487 - +2.7 750,497 - Atu3683 0.10 +1.2 750,536 + Atu3683 0.11 +0.5 750,555 - Atu3683 0.11 -1.4 750,609 + Atu3683 0.12 -0.1 750,617 - Atu3683 0.12 -0.3
Or see this region's nucleotide sequence