Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3263 and Atu3264 are separated by 74 nucleotides Atu3264 and Atu3265 are separated by 6 nucleotides Atu3265 and Atu3266 are separated by 95 nucleotides
Atu3263: Atu3263 - L-seryl-tRNA(Ser) selenium transferase, at 282,210 to 283,406
Atu3263
Atu3264: Atu3264 - IclR family transcriptional regulator, at 283,481 to 284,332
Atu3264
Atu3265: Atu3265 - hypothetical protein, at 284,339 to 284,821
Atu3265
Atu3266: Atu3266 - dihydroorotase, at 284,917 to 286,140
Atu3266
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 282.515 kb on + strand, within Atu3263 at 282.528 kb on - strand, within Atu3263 at 282.572 kb on + strand, within Atu3263 at 282.701 kb on + strand, within Atu3263 at 282.709 kb on - strand, within Atu3263 at 282.712 kb on + strand, within Atu3263 at 282.778 kb on + strand, within Atu3263 at 282.786 kb on - strand, within Atu3263 at 282.859 kb on + strand, within Atu3263 at 282.867 kb on - strand, within Atu3263 at 282.921 kb on + strand, within Atu3263 at 282.926 kb on + strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 283.001 kb on + strand, within Atu3263 at 283.010 kb on + strand, within Atu3263 at 283.091 kb on - strand, within Atu3263 at 283.163 kb on + strand, within Atu3263 at 283.174 kb on - strand, within Atu3263 at 283.307 kb on - strand at 283.307 kb on - strand at 283.331 kb on - strand at 283.357 kb on + strand at 283.694 kb on + strand, within Atu3264 at 283.756 kb on + strand, within Atu3264 at 283.787 kb on + strand, within Atu3264 at 283.876 kb on + strand, within Atu3264 at 283.978 kb on - strand, within Atu3264 at 284.167 kb on + strand, within Atu3264 at 284.276 kb on - strand at 284.276 kb on - strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.284 kb on + strand at 284.326 kb on + strand at 284.420 kb on + strand, within Atu3265 at 284.443 kb on + strand, within Atu3265 at 284.514 kb on + strand, within Atu3265 at 284.523 kb on + strand, within Atu3265 at 284.592 kb on - strand, within Atu3265 at 284.594 kb on + strand, within Atu3265 at 284.683 kb on - strand, within Atu3265 at 284.827 kb on + strand at 284.883 kb on + strand at 284.883 kb on + strand at 284.888 kb on + strand at 284.888 kb on + strand at 284.912 kb on - strand at 284.969 kb on - strand at 284.977 kb on + strand at 284.984 kb on + strand at 285.026 kb on - strand at 285.058 kb on - strand, within Atu3266 at 285.329 kb on - strand, within Atu3266
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 282,515 + Atu3263 0.25 +0.4 282,528 - Atu3263 0.27 +0.9 282,572 + Atu3263 0.30 +0.0 282,701 + Atu3263 0.41 -1.4 282,709 - Atu3263 0.42 -2.0 282,712 + Atu3263 0.42 +0.0 282,778 + Atu3263 0.47 +0.9 282,786 - Atu3263 0.48 -0.2 282,859 + Atu3263 0.54 +1.2 282,867 - Atu3263 0.55 +0.2 282,921 + Atu3263 0.59 +0.2 282,926 + Atu3263 0.60 +0.2 282,994 - Atu3263 0.65 +0.1 282,994 - Atu3263 0.65 +0.5 283,001 + Atu3263 0.66 +0.4 283,010 + Atu3263 0.67 -0.9 283,091 - Atu3263 0.74 -0.0 283,163 + Atu3263 0.80 +1.9 283,174 - Atu3263 0.81 +0.5 283,307 - +1.2 283,307 - -0.5 283,331 - +0.8 283,357 + -0.0 283,694 + Atu3264 0.25 -2.2 283,756 + Atu3264 0.32 -1.9 283,787 + Atu3264 0.36 -1.2 283,876 + Atu3264 0.46 -0.1 283,978 - Atu3264 0.58 -3.0 284,167 + Atu3264 0.81 -1.8 284,276 - +1.2 284,276 - -3.1 284,278 + +0.0 284,278 + -1.1 284,278 + -0.7 284,284 + -1.1 284,326 + +0.4 284,420 + Atu3265 0.17 +1.9 284,443 + Atu3265 0.22 -0.4 284,514 + Atu3265 0.36 -0.9 284,523 + Atu3265 0.38 +0.6 284,592 - Atu3265 0.52 +0.8 284,594 + Atu3265 0.53 -0.1 284,683 - Atu3265 0.71 -0.3 284,827 + +0.3 284,883 + +0.4 284,883 + +1.7 284,888 + +0.9 284,888 + -0.7 284,912 - +2.9 284,969 - +0.3 284,977 + +0.8 284,984 + -0.1 285,026 - -0.7 285,058 - Atu3266 0.12 -0.9 285,329 - Atu3266 0.34 -0.8
Or see this region's nucleotide sequence