Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3260 and Atu3261 are separated by 16 nucleotides Atu3261 and Atu3262 are separated by 100 nucleotides
Atu3260: Atu3260 - ABC transporter substrate binding protein, at 277,383 to 278,381
Atu3260
Atu3261: Atu3261 - ABC transporter permease, at 278,398 to 280,218
Atu3261
Atu3262: Atu3262 - ABC transporter permease, at 280,319 to 282,154
Atu3262
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.407 kb on - strand at 277.459 kb on + strand at 277.467 kb on - strand at 277.467 kb on - strand at 277.467 kb on - strand at 277.504 kb on + strand, within Atu3260 at 277.504 kb on + strand, within Atu3260 at 277.504 kb on + strand, within Atu3260 at 277.612 kb on + strand, within Atu3260 at 277.744 kb on + strand, within Atu3260 at 277.783 kb on - strand, within Atu3260 at 277.805 kb on - strand, within Atu3260 at 277.810 kb on - strand, within Atu3260 at 277.842 kb on + strand, within Atu3260 at 277.877 kb on + strand, within Atu3260 at 278.012 kb on + strand, within Atu3260 at 278.078 kb on - strand, within Atu3260 at 278.097 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.118 kb on - strand, within Atu3260 at 278.138 kb on + strand, within Atu3260 at 278.163 kb on - strand, within Atu3260 at 278.284 kb on + strand at 278.292 kb on - strand at 278.309 kb on + strand at 278.458 kb on + strand at 278.535 kb on + strand at 278.538 kb on + strand at 278.646 kb on - strand, within Atu3261 at 278.698 kb on - strand, within Atu3261 at 278.874 kb on - strand, within Atu3261 at 278.891 kb on + strand, within Atu3261 at 278.910 kb on - strand, within Atu3261 at 278.936 kb on + strand, within Atu3261 at 279.016 kb on + strand, within Atu3261 at 279.176 kb on + strand, within Atu3261 at 279.376 kb on - strand, within Atu3261 at 279.384 kb on - strand, within Atu3261 at 279.438 kb on + strand, within Atu3261 at 279.453 kb on + strand, within Atu3261 at 279.590 kb on + strand, within Atu3261 at 279.598 kb on - strand, within Atu3261 at 279.679 kb on + strand, within Atu3261 at 279.695 kb on + strand, within Atu3261 at 279.833 kb on + strand, within Atu3261 at 279.854 kb on + strand, within Atu3261 at 279.857 kb on - strand, within Atu3261 at 279.866 kb on + strand, within Atu3261 at 280.030 kb on + strand, within Atu3261 at 280.038 kb on - strand at 280.058 kb on + strand at 280.082 kb on + strand at 280.090 kb on - strand at 280.100 kb on - strand at 280.117 kb on + strand at 280.222 kb on - strand at 280.282 kb on + strand at 280.334 kb on - strand at 280.340 kb on + strand at 280.374 kb on + strand at 280.382 kb on - strand at 280.510 kb on - strand, within Atu3262 at 280.585 kb on + strand, within Atu3262 at 280.618 kb on + strand, within Atu3262 at 280.618 kb on + strand, within Atu3262 at 280.743 kb on + strand, within Atu3262 at 280.803 kb on - strand, within Atu3262 at 280.820 kb on - strand, within Atu3262 at 280.954 kb on - strand, within Atu3262 at 280.956 kb on + strand, within Atu3262 at 281.015 kb on - strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.064 kb on + strand, within Atu3262 at 281.153 kb on - strand, within Atu3262 at 281.168 kb on + strand, within Atu3262
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 277,407 - +0.4 277,459 + +0.2 277,467 - -2.6 277,467 - +0.7 277,467 - +0.9 277,504 + Atu3260 0.12 +0.2 277,504 + Atu3260 0.12 -0.3 277,504 + Atu3260 0.12 +1.7 277,612 + Atu3260 0.23 +2.1 277,744 + Atu3260 0.36 +1.0 277,783 - Atu3260 0.40 +2.4 277,805 - Atu3260 0.42 -0.1 277,810 - Atu3260 0.43 -1.7 277,842 + Atu3260 0.46 -1.6 277,877 + Atu3260 0.49 +0.3 278,012 + Atu3260 0.63 -0.9 278,078 - Atu3260 0.70 +0.4 278,097 - Atu3260 0.71 -0.8 278,108 - Atu3260 0.73 -0.4 278,108 - Atu3260 0.73 +0.1 278,108 - Atu3260 0.73 -1.7 278,108 - Atu3260 0.73 +0.7 278,118 - Atu3260 0.74 -0.4 278,138 + Atu3260 0.76 +0.1 278,163 - Atu3260 0.78 +1.6 278,284 + +0.9 278,292 - -0.7 278,309 + +2.1 278,458 + +0.4 278,535 + -0.6 278,538 + +0.5 278,646 - Atu3261 0.14 -1.1 278,698 - Atu3261 0.16 +0.6 278,874 - Atu3261 0.26 -1.5 278,891 + Atu3261 0.27 +0.3 278,910 - Atu3261 0.28 +0.5 278,936 + Atu3261 0.30 +2.4 279,016 + Atu3261 0.34 +0.9 279,176 + Atu3261 0.43 +1.5 279,376 - Atu3261 0.54 +0.3 279,384 - Atu3261 0.54 +0.5 279,438 + Atu3261 0.57 +1.5 279,453 + Atu3261 0.58 +2.1 279,590 + Atu3261 0.65 -0.1 279,598 - Atu3261 0.66 +0.6 279,679 + Atu3261 0.70 -1.5 279,695 + Atu3261 0.71 -0.7 279,833 + Atu3261 0.79 -2.4 279,854 + Atu3261 0.80 -2.4 279,857 - Atu3261 0.80 +0.5 279,866 + Atu3261 0.81 -1.5 280,030 + Atu3261 0.90 +1.0 280,038 - -0.4 280,058 + +0.8 280,082 + +0.2 280,090 - -0.8 280,100 - -0.9 280,117 + -0.4 280,222 - +0.2 280,282 + +0.1 280,334 - +0.4 280,340 + -0.2 280,374 + -0.5 280,382 - -0.4 280,510 - Atu3262 0.10 +0.9 280,585 + Atu3262 0.14 -1.5 280,618 + Atu3262 0.16 +0.5 280,618 + Atu3262 0.16 -1.5 280,743 + Atu3262 0.23 +0.9 280,803 - Atu3262 0.26 +1.2 280,820 - Atu3262 0.27 -1.6 280,954 - Atu3262 0.35 +1.1 280,956 + Atu3262 0.35 +0.3 281,015 - Atu3262 0.38 -0.2 281,017 + Atu3262 0.38 +0.7 281,017 + Atu3262 0.38 +0.1 281,017 + Atu3262 0.38 +0.2 281,064 + Atu3262 0.41 +2.6 281,153 - Atu3262 0.45 -0.4 281,168 + Atu3262 0.46 +1.3
Or see this region's nucleotide sequence