Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3151 and Atu3152 are separated by 92 nucleotides Atu3152 and Atu3153 are separated by 192 nucleotides
Atu3151: Atu3151 - sugar ABC transporter substrate-binding protein, at 159,439 to 160,710
Atu3151
Atu3152: Atu3152 - AraC family transcriptional regulator, at 160,803 to 161,693
Atu3152
Atu3153: Atu3153 - AraC family transcriptional regulator, at 161,886 to 162,740
Atu3153
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 159.803 kb on - strand, within Atu3151 at 159.826 kb on + strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.928 kb on - strand, within Atu3151 at 159.940 kb on + strand, within Atu3151 at 159.943 kb on - strand, within Atu3151 at 159.953 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.108 kb on - strand, within Atu3151 at 160.187 kb on + strand, within Atu3151 at 160.233 kb on - strand, within Atu3151 at 160.645 kb on - strand at 160.654 kb on + strand at 160.942 kb on - strand, within Atu3152 at 160.963 kb on - strand, within Atu3152 at 161.048 kb on - strand, within Atu3152 at 161.144 kb on + strand, within Atu3152 at 161.240 kb on - strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.276 kb on - strand, within Atu3152 at 161.456 kb on + strand, within Atu3152 at 161.512 kb on - strand, within Atu3152 at 161.682 kb on + strand at 161.693 kb on + strand at 161.824 kb on - strand at 161.851 kb on - strand at 161.867 kb on + strand at 161.892 kb on - strand at 161.899 kb on - strand at 161.900 kb on - strand at 161.953 kb on - strand at 162.076 kb on + strand, within Atu3153 at 162.084 kb on - strand, within Atu3153 at 162.212 kb on + strand, within Atu3153 at 162.242 kb on - strand, within Atu3153 at 162.481 kb on - strand, within Atu3153 at 162.496 kb on + strand, within Atu3153 at 162.515 kb on - strand, within Atu3153 at 162.521 kb on + strand, within Atu3153 at 162.533 kb on - strand, within Atu3153 at 162.549 kb on + strand, within Atu3153 at 162.557 kb on - strand, within Atu3153 at 162.598 kb on - strand, within Atu3153 at 162.620 kb on - strand, within Atu3153 at 162.630 kb on - strand, within Atu3153 at 162.642 kb on - strand, within Atu3153 at 162.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 159,803 - Atu3151 0.29 -2.2 159,826 + Atu3151 0.30 +1.6 159,902 - Atu3151 0.36 -0.4 159,902 - Atu3151 0.36 -0.5 159,928 - Atu3151 0.38 -0.2 159,940 + Atu3151 0.39 +2.2 159,943 - Atu3151 0.40 +0.1 159,953 + Atu3151 0.40 -2.1 160,058 + Atu3151 0.49 +0.2 160,058 + Atu3151 0.49 +0.1 160,108 - Atu3151 0.53 +1.1 160,187 + Atu3151 0.59 -1.2 160,233 - Atu3151 0.62 +1.0 160,645 - +1.0 160,654 + -0.2 160,942 - Atu3152 0.16 -0.2 160,963 - Atu3152 0.18 -2.2 161,048 - Atu3152 0.27 -2.8 161,144 + Atu3152 0.38 -0.2 161,240 - Atu3152 0.49 -1.4 161,244 + Atu3152 0.49 -0.3 161,244 + Atu3152 0.49 -1.2 161,276 - Atu3152 0.53 -0.3 161,456 + Atu3152 0.73 +0.8 161,512 - Atu3152 0.80 -2.3 161,682 + -0.1 161,693 + -0.7 161,824 - -0.6 161,851 - +2.3 161,867 + -0.7 161,892 - +0.7 161,899 - +0.6 161,900 - -0.1 161,953 - +1.1 162,076 + Atu3153 0.22 +4.0 162,084 - Atu3153 0.23 -0.6 162,212 + Atu3153 0.38 -1.0 162,242 - Atu3153 0.42 +1.2 162,481 - Atu3153 0.70 -0.1 162,496 + Atu3153 0.71 +0.2 162,515 - Atu3153 0.74 +3.2 162,521 + Atu3153 0.74 +0.5 162,533 - Atu3153 0.76 +0.2 162,549 + Atu3153 0.78 +2.0 162,557 - Atu3153 0.78 -0.0 162,598 - Atu3153 0.83 -1.2 162,620 - Atu3153 0.86 +0.3 162,630 - Atu3153 0.87 -0.1 162,642 - Atu3153 0.88 +0.2 162,689 + +0.1
Or see this region's nucleotide sequence