Strain Fitness in Agrobacterium fabrum C58 around Atu1795

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1794 and Atu1795 overlap by 17 nucleotidesAtu1795 and Atu1796 are separated by 27 nucleotides Atu1794: Atu1794 - 2-octaprenyl-6-methoxyphenol hydroxylase, at 1,781,116 to 1,782,324 Atu1794 Atu1795: Atu1795 - malonate transporter, at 1,782,308 to 1,783,246 Atu1795 Atu1796: Atu1796 - cytochrome c-type biogenesis protein, at 1,783,274 to 1,783,918 Atu1796 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1782.271 kb on + strandat 1782.368 kb on + strandat 1782.458 kb on - strand, within Atu1795at 1782.748 kb on - strand, within Atu1795at 1782.915 kb on - strand, within Atu1795at 1782.962 kb on + strand, within Atu1795at 1782.967 kb on + strand, within Atu1795at 1783.041 kb on - strand, within Atu1795at 1783.176 kb on - strandat 1783.273 kb on - strandat 1783.310 kb on - strandat 1784.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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1,782,271 + -1.1
1,782,368 + -2.4
1,782,458 - Atu1795 0.16 -1.5
1,782,748 - Atu1795 0.47 +2.6
1,782,915 - Atu1795 0.65 -0.1
1,782,962 + Atu1795 0.70 +1.0
1,782,967 + Atu1795 0.70 +5.0
1,783,041 - Atu1795 0.78 +0.3
1,783,176 - +1.4
1,783,273 - +0.6
1,783,310 - -0.8
1,784,153 - +1.1

Or see this region's nucleotide sequence