Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0294 and Atu0295 are separated by 239 nucleotides Atu0295 and Atu0296 are separated by 88 nucleotides Atu0296 and Atu0297 are separated by 121 nucleotides Atu0297 and Atu0298 are separated by 20 nucleotides
Atu0294: Atu0294 - undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein, at 288,790 to 289,596
Atu0294
Atu0295: Atu0295 - hypothetical protein, at 289,836 to 290,066
Atu0295
Atu0296: Atu0296 - NADH-ubiquinone oxidoreductase, at 290,155 to 291,135
Atu0296
Atu0297: Atu0297 - hypothetical protein, at 291,257 to 291,544
Atu0297
Atu0298: Atu0298 - orotidine 5, at 291,565 to 292,272
Atu0298
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.255 kb on - strand, within Atu0294 at 289.314 kb on + strand, within Atu0294 at 289.320 kb on - strand, within Atu0294 at 289.455 kb on - strand, within Atu0294 at 289.585 kb on - strand at 289.603 kb on + strand at 289.689 kb on + strand at 289.697 kb on - strand at 289.709 kb on + strand at 289.788 kb on + strand at 289.870 kb on + strand, within Atu0295 at 289.951 kb on - strand, within Atu0295 at 289.963 kb on + strand, within Atu0295 at 290.019 kb on - strand, within Atu0295 at 290.154 kb on - strand at 290.154 kb on - strand at 290.215 kb on - strand at 290.371 kb on - strand, within Atu0296 at 290.473 kb on - strand, within Atu0296 at 290.485 kb on - strand, within Atu0296 at 290.688 kb on - strand, within Atu0296 at 290.692 kb on + strand, within Atu0296 at 290.737 kb on + strand, within Atu0296 at 290.948 kb on + strand, within Atu0296 at 290.949 kb on + strand, within Atu0296 at 291.009 kb on + strand, within Atu0296 at 291.017 kb on - strand, within Atu0296 at 291.019 kb on + strand, within Atu0296 at 291.027 kb on - strand, within Atu0296 at 291.046 kb on - strand at 291.130 kb on + strand at 291.138 kb on - strand at 291.144 kb on + strand at 291.144 kb on + strand at 291.144 kb on + strand at 291.152 kb on - strand at 291.182 kb on + strand at 291.182 kb on + strand at 291.182 kb on + strand at 291.229 kb on - strand at 291.231 kb on + strand at 291.323 kb on + strand, within Atu0297 at 291.333 kb on - strand, within Atu0297 at 291.348 kb on + strand, within Atu0297 at 291.363 kb on + strand, within Atu0297 at 291.454 kb on + strand, within Atu0297 at 291.471 kb on + strand, within Atu0297 at 291.859 kb on + strand, within Atu0298 at 291.862 kb on - strand, within Atu0298 at 291.904 kb on - strand, within Atu0298 at 291.925 kb on + strand, within Atu0298 at 291.933 kb on - strand, within Atu0298 at 291.933 kb on - strand, within Atu0298 at 291.993 kb on - strand, within Atu0298 at 292.000 kb on - strand, within Atu0298 at 292.022 kb on + strand, within Atu0298 at 292.064 kb on + strand, within Atu0298 at 292.072 kb on - strand, within Atu0298 at 292.072 kb on - strand, within Atu0298 at 292.074 kb on - strand, within Atu0298 at 292.083 kb on + strand, within Atu0298
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 289,255 - Atu0294 0.58 -1.2 289,314 + Atu0294 0.65 -2.1 289,320 - Atu0294 0.66 -0.5 289,455 - Atu0294 0.82 -0.9 289,585 - +0.3 289,603 + +0.4 289,689 + +0.5 289,697 - -0.6 289,709 + -1.0 289,788 + -1.9 289,870 + Atu0295 0.15 +0.8 289,951 - Atu0295 0.50 +0.9 289,963 + Atu0295 0.55 +0.2 290,019 - Atu0295 0.79 +0.0 290,154 - -0.6 290,154 - +0.3 290,215 - +0.7 290,371 - Atu0296 0.22 +0.7 290,473 - Atu0296 0.32 -1.3 290,485 - Atu0296 0.34 +2.0 290,688 - Atu0296 0.54 +1.0 290,692 + Atu0296 0.55 -2.7 290,737 + Atu0296 0.59 -2.6 290,948 + Atu0296 0.81 -3.5 290,949 + Atu0296 0.81 -0.8 291,009 + Atu0296 0.87 +0.4 291,017 - Atu0296 0.88 -0.8 291,019 + Atu0296 0.88 -1.3 291,027 - Atu0296 0.89 -1.1 291,046 - -0.5 291,130 + -0.6 291,138 - -0.6 291,144 + -0.8 291,144 + -1.3 291,144 + +0.2 291,152 - -0.5 291,182 + -0.2 291,182 + -2.7 291,182 + -0.9 291,229 - -0.0 291,231 + -0.6 291,323 + Atu0297 0.23 -0.4 291,333 - Atu0297 0.26 +0.5 291,348 + Atu0297 0.32 +0.1 291,363 + Atu0297 0.37 +1.1 291,454 + Atu0297 0.68 +1.8 291,471 + Atu0297 0.74 +0.7 291,859 + Atu0298 0.42 +0.1 291,862 - Atu0298 0.42 -0.7 291,904 - Atu0298 0.48 -1.4 291,925 + Atu0298 0.51 -0.0 291,933 - Atu0298 0.52 -0.8 291,933 - Atu0298 0.52 -2.8 291,993 - Atu0298 0.60 +1.9 292,000 - Atu0298 0.61 +1.4 292,022 + Atu0298 0.65 -0.4 292,064 + Atu0298 0.70 -0.5 292,072 - Atu0298 0.72 -0.5 292,072 - Atu0298 0.72 +0.1 292,074 - Atu0298 0.72 -1.8 292,083 + Atu0298 0.73 +0.7
Or see this region's nucleotide sequence