Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0075 and Atu0076 are separated by 6 nucleotides Atu0076 and Atu0077 are separated by 48 nucleotides Atu0077 and Atu0078 are separated by 174 nucleotides Atu0078 and Atu0079 overlap by 8 nucleotides
Atu0075: Atu0075 - hypothetical protein, at 77,960 to 78,436
Atu0075
Atu0076: Atu0076 - hypothetical protein, at 78,443 to 79,132
Atu0076
Atu0077: Atu0077 - D-isomer specific 2-hydroxyacid dehydrogenases family protein, at 79,181 to 80,185
Atu0077
Atu0078: Atu0078 - hypothetical protein, at 80,360 to 80,899
Atu0078
Atu0079: Atu0079 - Atu0079-1 mutant of pfkB family carbohydrate kinase, at 80,892 to 81,884
Atu0079
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 78.190 kb on + strand, within Atu0075 at 78.389 kb on + strand at 78.397 kb on - strand at 78.397 kb on - strand at 78.458 kb on + strand at 78.491 kb on + strand at 78.497 kb on + strand at 78.501 kb on + strand at 78.550 kb on + strand, within Atu0076 at 78.588 kb on + strand, within Atu0076 at 78.657 kb on - strand, within Atu0076 at 78.782 kb on + strand, within Atu0076 at 78.801 kb on + strand, within Atu0076 at 78.819 kb on + strand, within Atu0076 at 78.819 kb on + strand, within Atu0076 at 78.828 kb on + strand, within Atu0076 at 78.828 kb on + strand, within Atu0076 at 78.893 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.947 kb on - strand, within Atu0076 at 78.980 kb on - strand, within Atu0076 at 78.980 kb on - strand, within Atu0076 at 79.015 kb on - strand, within Atu0076 at 79.020 kb on + strand, within Atu0076 at 79.179 kb on + strand at 79.187 kb on - strand at 79.187 kb on - strand at 79.322 kb on - strand, within Atu0077 at 79.342 kb on + strand, within Atu0077 at 79.455 kb on + strand, within Atu0077 at 79.455 kb on + strand, within Atu0077 at 79.463 kb on - strand, within Atu0077 at 79.489 kb on - strand, within Atu0077 at 79.510 kb on + strand, within Atu0077 at 79.541 kb on - strand, within Atu0077 at 79.573 kb on + strand, within Atu0077 at 79.865 kb on - strand, within Atu0077 at 79.892 kb on - strand, within Atu0077 at 80.021 kb on - strand, within Atu0077 at 80.044 kb on + strand, within Atu0077 at 80.062 kb on + strand, within Atu0077 at 80.161 kb on - strand at 80.169 kb on + strand at 80.193 kb on - strand at 81.015 kb on - strand, within Atu0079 at 81.017 kb on + strand, within Atu0079 at 81.020 kb on - strand, within Atu0079 at 81.025 kb on - strand, within Atu0079 at 81.062 kb on - strand, within Atu0079 at 81.096 kb on - strand, within Atu0079 at 81.101 kb on - strand, within Atu0079 at 81.118 kb on - strand, within Atu0079
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 78,190 + Atu0075 0.48 -0.3 78,389 + -0.8 78,397 - -0.9 78,397 - +0.5 78,458 + -1.4 78,491 + -0.3 78,497 + +3.1 78,501 + -0.6 78,550 + Atu0076 0.16 -1.4 78,588 + Atu0076 0.21 +0.5 78,657 - Atu0076 0.31 -2.0 78,782 + Atu0076 0.49 -0.5 78,801 + Atu0076 0.52 -0.4 78,819 + Atu0076 0.54 -0.1 78,819 + Atu0076 0.54 +1.2 78,828 + Atu0076 0.56 -0.7 78,828 + Atu0076 0.56 -0.1 78,893 + Atu0076 0.65 +0.1 78,939 + Atu0076 0.72 -1.6 78,939 + Atu0076 0.72 -0.1 78,939 + Atu0076 0.72 +1.0 78,947 - Atu0076 0.73 -3.7 78,980 - Atu0076 0.78 -1.3 78,980 - Atu0076 0.78 +1.2 79,015 - Atu0076 0.83 +0.6 79,020 + Atu0076 0.84 -0.9 79,179 + -0.3 79,187 - +1.8 79,187 - -0.6 79,322 - Atu0077 0.14 +1.9 79,342 + Atu0077 0.16 -2.1 79,455 + Atu0077 0.27 -0.1 79,455 + Atu0077 0.27 +1.2 79,463 - Atu0077 0.28 +1.0 79,489 - Atu0077 0.31 +0.0 79,510 + Atu0077 0.33 +1.4 79,541 - Atu0077 0.36 +2.8 79,573 + Atu0077 0.39 +0.6 79,865 - Atu0077 0.68 +0.9 79,892 - Atu0077 0.71 +0.5 80,021 - Atu0077 0.84 -1.7 80,044 + Atu0077 0.86 +1.4 80,062 + Atu0077 0.88 +0.1 80,161 - +0.8 80,169 + -0.8 80,193 - +0.3 81,015 - Atu0079 0.12 +0.4 81,017 + Atu0079 0.13 +0.4 81,020 - Atu0079 0.13 +0.4 81,025 - Atu0079 0.13 -0.2 81,062 - Atu0079 0.17 +0.2 81,096 - Atu0079 0.21 +1.0 81,101 - Atu0079 0.21 -0.7 81,118 - Atu0079 0.23 +0.3
Or see this region's nucleotide sequence