Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3778 and Atu3779 are separated by 195 nucleotides Atu3779 and Atu3780 are separated by 63 nucleotides
Atu3778: Atu3778 - UTP-glucose-1-phosphate uridylyltransferase, at 860,825 to 861,712
Atu3778
Atu3779: Atu3779 - lytic murein transglycosylase, at 861,908 to 863,128
Atu3779
Atu3780: Atu3780 - hypothetical protein, at 863,192 to 864,427
Atu3780
Position (kb) 861
862
863
864 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 861.084 kb on - strand, within Atu3778 at 861.111 kb on + strand, within Atu3778 at 861.149 kb on + strand, within Atu3778 at 861.224 kb on - strand, within Atu3778 at 861.234 kb on + strand, within Atu3778 at 861.336 kb on - strand, within Atu3778 at 861.367 kb on + strand, within Atu3778 at 861.402 kb on - strand, within Atu3778 at 861.414 kb on + strand, within Atu3778 at 861.422 kb on - strand, within Atu3778 at 861.527 kb on - strand, within Atu3778 at 861.527 kb on - strand, within Atu3778 at 861.660 kb on - strand at 861.677 kb on + strand at 861.998 kb on + strand at 862.060 kb on - strand, within Atu3779 at 862.117 kb on + strand, within Atu3779 at 862.177 kb on + strand, within Atu3779 at 862.185 kb on + strand, within Atu3779 at 862.237 kb on + strand, within Atu3779 at 862.237 kb on + strand, within Atu3779 at 862.327 kb on + strand, within Atu3779 at 862.352 kb on - strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.460 kb on - strand, within Atu3779 at 862.509 kb on - strand, within Atu3779 at 862.546 kb on - strand, within Atu3779 at 862.620 kb on + strand, within Atu3779 at 862.740 kb on - strand, within Atu3779 at 862.746 kb on - strand, within Atu3779 at 862.860 kb on + strand, within Atu3779 at 862.868 kb on - strand, within Atu3779 at 862.868 kb on - strand, within Atu3779 at 862.933 kb on + strand, within Atu3779 at 862.938 kb on + strand, within Atu3779 at 863.001 kb on - strand, within Atu3779 at 863.057 kb on + strand at 863.107 kb on + strand at 863.119 kb on + strand at 863.122 kb on - strand at 863.163 kb on + strand at 863.180 kb on - strand at 863.249 kb on + strand at 863.306 kb on - strand at 863.440 kb on + strand, within Atu3780 at 863.609 kb on - strand, within Atu3780 at 863.609 kb on - strand, within Atu3780 at 863.628 kb on - strand, within Atu3780 at 863.816 kb on + strand, within Atu3780 at 863.856 kb on + strand, within Atu3780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 861,084 - Atu3778 0.29 -0.2 861,111 + Atu3778 0.32 +1.3 861,149 + Atu3778 0.36 -1.2 861,224 - Atu3778 0.45 +0.9 861,234 + Atu3778 0.46 +0.9 861,336 - Atu3778 0.58 +0.2 861,367 + Atu3778 0.61 +0.3 861,402 - Atu3778 0.65 +1.2 861,414 + Atu3778 0.66 -2.4 861,422 - Atu3778 0.67 +1.6 861,527 - Atu3778 0.79 -2.2 861,527 - Atu3778 0.79 -1.5 861,660 - -1.0 861,677 + +0.4 861,998 + +0.2 862,060 - Atu3779 0.12 -0.9 862,117 + Atu3779 0.17 -1.0 862,177 + Atu3779 0.22 -0.9 862,185 + Atu3779 0.23 -4.1 862,237 + Atu3779 0.27 +1.6 862,237 + Atu3779 0.27 -1.9 862,327 + Atu3779 0.34 -1.8 862,352 - Atu3779 0.36 -3.9 862,369 + Atu3779 0.38 -0.7 862,369 + Atu3779 0.38 -0.7 862,460 - Atu3779 0.45 -2.5 862,509 - Atu3779 0.49 -0.7 862,546 - Atu3779 0.52 -1.6 862,620 + Atu3779 0.58 -1.4 862,740 - Atu3779 0.68 -2.0 862,746 - Atu3779 0.69 -2.0 862,860 + Atu3779 0.78 -0.1 862,868 - Atu3779 0.79 -1.4 862,868 - Atu3779 0.79 +1.4 862,933 + Atu3779 0.84 -1.4 862,938 + Atu3779 0.84 -2.5 863,001 - Atu3779 0.90 -0.5 863,057 + +0.3 863,107 + -0.4 863,119 + -0.0 863,122 - +0.5 863,163 + +0.0 863,180 - +1.1 863,249 + +1.2 863,306 - -0.4 863,440 + Atu3780 0.20 +1.4 863,609 - Atu3780 0.34 -3.0 863,609 - Atu3780 0.34 +0.3 863,628 - Atu3780 0.35 -2.2 863,816 + Atu3780 0.50 -1.7 863,856 + Atu3780 0.54 +2.3
Or see this region's nucleotide sequence