Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3693 and Atu3694 are separated by 125 nucleotides Atu3694 and Atu3695 are separated by 29 nucleotides
Atu3693: Atu3693 - two component sensor kinase, at 768,064 to 769,035
Atu3693
Atu3694: Atu3694 - penicillin binding protein, at 769,161 to 771,206
Atu3694
Atu3695: Atu3695 - hypothetical protein, at 771,236 to 776,692
Atu3695
Position (kb) 769
770
771
772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 768.170 kb on - strand, within Atu3693 at 768.278 kb on + strand, within Atu3693 at 768.379 kb on + strand, within Atu3693 at 768.379 kb on + strand, within Atu3693 at 768.498 kb on + strand, within Atu3693 at 768.614 kb on - strand, within Atu3693 at 768.621 kb on - strand, within Atu3693 at 768.626 kb on + strand, within Atu3693 at 768.700 kb on - strand, within Atu3693 at 768.734 kb on + strand, within Atu3693 at 768.807 kb on - strand, within Atu3693 at 768.884 kb on + strand, within Atu3693 at 768.990 kb on - strand at 769.024 kb on + strand at 769.036 kb on - strand at 769.166 kb on - strand at 769.348 kb on + strand at 769.434 kb on - strand, within Atu3694 at 769.503 kb on + strand, within Atu3694 at 769.565 kb on + strand, within Atu3694 at 769.573 kb on - strand, within Atu3694 at 769.691 kb on - strand, within Atu3694 at 769.721 kb on + strand, within Atu3694 at 769.755 kb on - strand, within Atu3694 at 769.801 kb on + strand, within Atu3694 at 769.820 kb on - strand, within Atu3694 at 769.829 kb on + strand, within Atu3694 at 769.831 kb on + strand, within Atu3694 at 769.831 kb on + strand, within Atu3694 at 769.839 kb on - strand, within Atu3694 at 769.857 kb on - strand, within Atu3694 at 769.873 kb on + strand, within Atu3694 at 769.881 kb on - strand, within Atu3694 at 769.927 kb on - strand, within Atu3694 at 770.011 kb on + strand, within Atu3694 at 770.011 kb on + strand, within Atu3694 at 770.019 kb on - strand, within Atu3694 at 770.209 kb on - strand, within Atu3694 at 770.242 kb on + strand, within Atu3694 at 770.314 kb on + strand, within Atu3694 at 770.530 kb on + strand, within Atu3694 at 770.646 kb on + strand, within Atu3694 at 770.705 kb on - strand, within Atu3694 at 770.710 kb on + strand, within Atu3694 at 770.718 kb on - strand, within Atu3694 at 770.944 kb on + strand, within Atu3694 at 770.947 kb on - strand, within Atu3694 at 771.029 kb on - strand at 771.104 kb on - strand at 771.112 kb on - strand at 771.148 kb on + strand at 771.148 kb on + strand at 771.156 kb on - strand at 771.156 kb on - strand at 771.358 kb on + strand at 771.455 kb on - strand at 771.584 kb on - strand at 771.608 kb on - strand at 771.627 kb on - strand at 771.657 kb on - strand at 771.724 kb on + strand at 771.727 kb on - strand at 771.761 kb on + strand at 771.769 kb on - strand at 771.781 kb on + strand at 771.906 kb on - strand, within Atu3695 at 771.917 kb on - strand, within Atu3695 at 772.031 kb on + strand, within Atu3695 at 772.039 kb on - strand, within Atu3695 at 772.087 kb on - strand, within Atu3695 at 772.109 kb on - strand, within Atu3695 at 772.112 kb on + strand, within Atu3695 at 772.112 kb on + strand, within Atu3695 at 772.112 kb on + strand, within Atu3695 at 772.154 kb on - strand, within Atu3695 at 772.154 kb on - strand, within Atu3695
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 768,170 - Atu3693 0.11 +1.9 768,278 + Atu3693 0.22 -4.3 768,379 + Atu3693 0.32 -0.3 768,379 + Atu3693 0.32 +1.4 768,498 + Atu3693 0.45 -2.7 768,614 - Atu3693 0.57 -3.9 768,621 - Atu3693 0.57 +0.2 768,626 + Atu3693 0.58 +1.7 768,700 - Atu3693 0.65 +1.6 768,734 + Atu3693 0.69 +0.1 768,807 - Atu3693 0.76 +0.2 768,884 + Atu3693 0.84 -0.1 768,990 - -1.3 769,024 + +1.6 769,036 - -0.4 769,166 - -0.1 769,348 + +0.2 769,434 - Atu3694 0.13 -1.2 769,503 + Atu3694 0.17 -0.7 769,565 + Atu3694 0.20 -1.2 769,573 - Atu3694 0.20 +0.4 769,691 - Atu3694 0.26 +2.3 769,721 + Atu3694 0.27 +0.9 769,755 - Atu3694 0.29 +0.9 769,801 + Atu3694 0.31 -1.7 769,820 - Atu3694 0.32 -1.0 769,829 + Atu3694 0.33 +0.3 769,831 + Atu3694 0.33 +2.0 769,831 + Atu3694 0.33 +0.3 769,839 - Atu3694 0.33 +0.9 769,857 - Atu3694 0.34 -0.5 769,873 + Atu3694 0.35 +1.9 769,881 - Atu3694 0.35 +0.5 769,927 - Atu3694 0.37 +0.6 770,011 + Atu3694 0.42 +0.0 770,011 + Atu3694 0.42 +1.9 770,019 - Atu3694 0.42 -0.3 770,209 - Atu3694 0.51 -2.1 770,242 + Atu3694 0.53 +0.5 770,314 + Atu3694 0.56 -3.5 770,530 + Atu3694 0.67 -0.7 770,646 + Atu3694 0.73 +2.3 770,705 - Atu3694 0.75 -0.3 770,710 + Atu3694 0.76 -2.3 770,718 - Atu3694 0.76 -0.1 770,944 + Atu3694 0.87 +0.2 770,947 - Atu3694 0.87 -0.5 771,029 - -1.7 771,104 - -0.2 771,112 - +0.9 771,148 + +2.2 771,148 + -1.3 771,156 - +1.2 771,156 - +0.1 771,358 + +0.3 771,455 - +1.2 771,584 - +0.8 771,608 - +3.0 771,627 - +0.7 771,657 - +0.3 771,724 + +0.7 771,727 - +2.6 771,761 + +0.4 771,769 - +2.1 771,781 + +2.0 771,906 - Atu3695 0.12 +0.0 771,917 - Atu3695 0.12 -0.1 772,031 + Atu3695 0.15 -0.1 772,039 - Atu3695 0.15 -0.4 772,087 - Atu3695 0.16 +0.1 772,109 - Atu3695 0.16 +2.6 772,112 + Atu3695 0.16 -1.9 772,112 + Atu3695 0.16 +1.0 772,112 + Atu3695 0.16 -2.1 772,154 - Atu3695 0.17 +0.0 772,154 - Atu3695 0.17 +1.0
Or see this region's nucleotide sequence