Strain Fitness in Agrobacterium fabrum C58 around Atu1594

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1592 and Atu1594 are separated by 278 nucleotidesAtu1594 and Atu1595 overlap by 4 nucleotides Atu1592: Atu1592 - hypothetical protein, at 1,575,229 to 1,575,924 Atu1592 Atu1594: Atu1594 - lipid A biosynthesis lauroyl acyltransferase, at 1,576,203 to 1,577,141 Atu1594 Atu1595: Atu1595 - NADPH:quinone reductase, at 1,577,138 to 1,578,166 Atu1595 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -2 -1 0 1at 1575.268 kb on + strandat 1575.339 kb on - strand, within Atu1592at 1575.465 kb on + strand, within Atu1592at 1575.690 kb on + strand, within Atu1592at 1575.720 kb on - strand, within Atu1592at 1575.793 kb on + strand, within Atu1592at 1576.121 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
remove
1,575,268 + -0.5
1,575,339 - Atu1592 0.16 -2.4
1,575,465 + Atu1592 0.34 -2.4
1,575,690 + Atu1592 0.66 -2.5
1,575,720 - Atu1592 0.71 -1.8
1,575,793 + Atu1592 0.81 -0.1
1,576,121 - -0.2

Or see this region's nucleotide sequence