Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0126 and Atu0127 are separated by 82 nucleotides Atu0127 and Atu0128 are separated by 7 nucleotides
Atu0126: Atu0126 - membrane lipoprotein, at 129,978 to 130,970
Atu0126
Atu0127: Atu0127 - ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide), at 131,053 to 132,558
Atu0127
Atu0128: Atu0128 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 132,566 to 133,669
Atu0128
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 130.058 kb on + strand at 130.058 kb on + strand at 130.066 kb on - strand at 130.066 kb on - strand at 130.363 kb on + strand, within Atu0126 at 130.465 kb on + strand, within Atu0126 at 130.547 kb on - strand, within Atu0126 at 130.561 kb on + strand, within Atu0126 at 130.569 kb on - strand, within Atu0126 at 130.769 kb on - strand, within Atu0126 at 130.809 kb on - strand, within Atu0126 at 130.860 kb on + strand, within Atu0126 at 130.895 kb on - strand at 130.898 kb on + strand at 130.901 kb on - strand at 131.039 kb on + strand at 131.047 kb on - strand at 131.047 kb on - strand at 131.047 kb on - strand at 131.207 kb on + strand, within Atu0127 at 131.207 kb on + strand, within Atu0127 at 131.225 kb on - strand, within Atu0127 at 131.254 kb on + strand, within Atu0127 at 131.262 kb on - strand, within Atu0127 at 131.295 kb on + strand, within Atu0127 at 131.412 kb on + strand, within Atu0127 at 131.438 kb on + strand, within Atu0127 at 131.465 kb on + strand, within Atu0127 at 131.560 kb on + strand, within Atu0127 at 131.619 kb on + strand, within Atu0127 at 131.619 kb on + strand, within Atu0127 at 131.642 kb on + strand, within Atu0127 at 131.650 kb on - strand, within Atu0127 at 131.699 kb on + strand, within Atu0127 at 131.723 kb on - strand, within Atu0127 at 131.823 kb on - strand, within Atu0127 at 131.852 kb on + strand, within Atu0127 at 131.934 kb on + strand, within Atu0127 at 131.974 kb on - strand, within Atu0127 at 132.045 kb on + strand, within Atu0127 at 132.052 kb on - strand, within Atu0127 at 132.171 kb on + strand, within Atu0127 at 132.204 kb on - strand, within Atu0127 at 132.248 kb on - strand, within Atu0127 at 132.451 kb on + strand at 132.622 kb on + strand at 132.751 kb on + strand, within Atu0128 at 132.751 kb on + strand, within Atu0128 at 132.773 kb on - strand, within Atu0128 at 132.799 kb on + strand, within Atu0128 at 132.807 kb on - strand, within Atu0128 at 132.814 kb on + strand, within Atu0128 at 132.822 kb on - strand, within Atu0128 at 132.825 kb on + strand, within Atu0128 at 132.886 kb on - strand, within Atu0128 at 132.908 kb on - strand, within Atu0128 at 132.986 kb on + strand, within Atu0128 at 133.148 kb on - strand, within Atu0128 at 133.215 kb on - strand, within Atu0128 at 133.224 kb on + strand, within Atu0128 at 133.229 kb on + strand, within Atu0128 at 133.262 kb on - strand, within Atu0128 at 133.271 kb on + strand, within Atu0128 at 133.277 kb on - strand, within Atu0128 at 133.283 kb on - strand, within Atu0128 at 133.474 kb on + strand, within Atu0128 at 133.524 kb on + strand, within Atu0128 at 133.532 kb on - strand, within Atu0128
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 130,058 + -0.7 130,058 + +0.9 130,066 - -2.7 130,066 - +0.5 130,363 + Atu0126 0.39 +1.7 130,465 + Atu0126 0.49 +1.5 130,547 - Atu0126 0.57 +0.8 130,561 + Atu0126 0.59 +0.5 130,569 - Atu0126 0.60 -2.2 130,769 - Atu0126 0.80 -0.7 130,809 - Atu0126 0.84 +1.4 130,860 + Atu0126 0.89 +0.5 130,895 - -0.2 130,898 + +1.7 130,901 - -0.2 131,039 + -3.9 131,047 - -3.1 131,047 - +0.9 131,047 - +0.1 131,207 + Atu0127 0.10 -0.3 131,207 + Atu0127 0.10 -0.5 131,225 - Atu0127 0.11 +0.4 131,254 + Atu0127 0.13 +1.0 131,262 - Atu0127 0.14 +0.5 131,295 + Atu0127 0.16 +0.1 131,412 + Atu0127 0.24 +2.0 131,438 + Atu0127 0.26 -1.6 131,465 + Atu0127 0.27 +0.6 131,560 + Atu0127 0.34 +2.4 131,619 + Atu0127 0.38 +1.0 131,619 + Atu0127 0.38 +1.6 131,642 + Atu0127 0.39 +0.8 131,650 - Atu0127 0.40 -1.0 131,699 + Atu0127 0.43 -2.4 131,723 - Atu0127 0.44 +0.4 131,823 - Atu0127 0.51 -2.9 131,852 + Atu0127 0.53 -2.0 131,934 + Atu0127 0.58 +0.8 131,974 - Atu0127 0.61 +0.4 132,045 + Atu0127 0.66 +4.8 132,052 - Atu0127 0.66 +0.3 132,171 + Atu0127 0.74 -0.2 132,204 - Atu0127 0.76 -2.9 132,248 - Atu0127 0.79 -0.7 132,451 + -0.8 132,622 + -1.8 132,751 + Atu0128 0.17 +0.0 132,751 + Atu0128 0.17 +0.9 132,773 - Atu0128 0.19 -3.6 132,799 + Atu0128 0.21 +1.4 132,807 - Atu0128 0.22 -0.4 132,814 + Atu0128 0.22 -0.9 132,822 - Atu0128 0.23 +1.8 132,825 + Atu0128 0.23 +1.5 132,886 - Atu0128 0.29 +0.6 132,908 - Atu0128 0.31 +1.8 132,986 + Atu0128 0.38 +1.3 133,148 - Atu0128 0.53 -0.7 133,215 - Atu0128 0.59 +0.4 133,224 + Atu0128 0.60 +0.9 133,229 + Atu0128 0.60 +0.5 133,262 - Atu0128 0.63 +1.8 133,271 + Atu0128 0.64 -2.8 133,277 - Atu0128 0.64 +1.7 133,283 - Atu0128 0.65 +3.3 133,474 + Atu0128 0.82 -1.2 133,524 + Atu0128 0.87 +1.7 133,532 - Atu0128 0.88 +5.0
Or see this region's nucleotide sequence