Strain Fitness in Agrobacterium fabrum C58 around Atu5434

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5433 and Atu5434 are separated by 133 nucleotidesAtu5434 and Atu5435 are separated by 19 nucleotides Atu5433: Atu5433 - LacI family transcription regulator, at 426,065 to 427,075 Atu5433 Atu5434: Atu5434 - hypothetical protein, at 427,209 to 428,132 Atu5434 Atu5435: Atu5435 - oxidoreductase, at 428,152 to 429,324 Atu5435 Position (kb) 427 428 429Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 426.286 kb on + strand, within Atu5433at 426.294 kb on - strand, within Atu5433at 426.325 kb on + strand, within Atu5433at 426.343 kb on + strand, within Atu5433at 426.343 kb on + strand, within Atu5433at 426.368 kb on + strand, within Atu5433at 426.370 kb on + strand, within Atu5433at 426.415 kb on + strand, within Atu5433at 426.438 kb on - strand, within Atu5433at 426.446 kb on + strand, within Atu5433at 426.593 kb on + strand, within Atu5433at 426.593 kb on + strand, within Atu5433at 426.595 kb on + strand, within Atu5433at 426.601 kb on - strand, within Atu5433at 426.601 kb on - strand, within Atu5433at 426.603 kb on - strand, within Atu5433at 426.627 kb on + strand, within Atu5433at 426.656 kb on + strand, within Atu5433at 426.689 kb on - strand, within Atu5433at 426.715 kb on - strand, within Atu5433at 426.815 kb on - strand, within Atu5433at 426.815 kb on - strand, within Atu5433at 426.826 kb on + strand, within Atu5433at 426.834 kb on - strand, within Atu5433at 426.903 kb on - strand, within Atu5433at 426.903 kb on - strand, within Atu5433at 426.922 kb on - strand, within Atu5433at 426.973 kb on - strand, within Atu5433at 426.982 kb on + strandat 426.985 kb on - strandat 426.993 kb on - strandat 427.078 kb on + strandat 427.144 kb on + strandat 427.150 kb on - strandat 427.164 kb on - strandat 427.170 kb on + strandat 427.170 kb on + strandat 427.170 kb on + strandat 427.211 kb on + strandat 427.223 kb on + strandat 427.235 kb on + strandat 427.301 kb on + strandat 427.301 kb on + strandat 427.301 kb on + strandat 427.301 kb on + strandat 427.309 kb on - strand, within Atu5434at 427.309 kb on - strand, within Atu5434at 427.309 kb on - strand, within Atu5434at 427.309 kb on - strand, within Atu5434at 427.309 kb on - strand, within Atu5434at 427.309 kb on - strand, within Atu5434at 427.361 kb on - strand, within Atu5434at 427.388 kb on - strand, within Atu5434at 427.388 kb on - strand, within Atu5434at 427.405 kb on - strand, within Atu5434at 427.430 kb on + strand, within Atu5434at 427.430 kb on + strand, within Atu5434at 427.438 kb on - strand, within Atu5434at 427.486 kb on - strand, within Atu5434at 427.524 kb on + strand, within Atu5434at 427.532 kb on - strand, within Atu5434at 427.544 kb on + strand, within Atu5434at 427.544 kb on + strand, within Atu5434at 427.638 kb on + strand, within Atu5434at 427.658 kb on + strand, within Atu5434at 427.658 kb on + strand, within Atu5434at 427.663 kb on + strand, within Atu5434at 427.666 kb on - strand, within Atu5434at 427.684 kb on + strand, within Atu5434at 427.806 kb on - strand, within Atu5434at 427.811 kb on - strand, within Atu5434at 427.816 kb on - strand, within Atu5434at 427.829 kb on - strand, within Atu5434at 427.842 kb on - strand, within Atu5434at 427.953 kb on + strand, within Atu5434at 427.961 kb on - strand, within Atu5434at 427.961 kb on - strand, within Atu5434at 427.963 kb on + strand, within Atu5434at 428.039 kb on - strand, within Atu5434at 428.061 kb on - strandat 428.099 kb on - strandat 428.200 kb on - strandat 428.264 kb on + strandat 428.402 kb on + strand, within Atu5435at 428.402 kb on + strand, within Atu5435at 428.425 kb on + strand, within Atu5435at 428.504 kb on + strand, within Atu5435at 428.512 kb on - strand, within Atu5435at 428.548 kb on - strand, within Atu5435at 428.555 kb on + strand, within Atu5435at 428.573 kb on + strand, within Atu5435at 428.580 kb on - strand, within Atu5435at 428.580 kb on - strand, within Atu5435at 428.676 kb on - strand, within Atu5435at 428.698 kb on + strand, within Atu5435at 428.698 kb on + strand, within Atu5435at 428.698 kb on + strand, within Atu5435at 428.706 kb on - strand, within Atu5435at 428.736 kb on - strand, within Atu5435at 428.750 kb on + strand, within Atu5435at 428.766 kb on + strand, within Atu5435at 428.774 kb on - strand, within Atu5435at 428.776 kb on + strand, within Atu5435at 428.779 kb on - strand, within Atu5435at 428.837 kb on - strand, within Atu5435at 428.869 kb on + strand, within Atu5435at 428.904 kb on - strand, within Atu5435at 428.922 kb on + strand, within Atu5435at 428.923 kb on + strand, within Atu5435at 428.927 kb on + strand, within Atu5435at 428.935 kb on - strand, within Atu5435at 428.968 kb on - strand, within Atu5435at 428.968 kb on - strand, within Atu5435at 429.010 kb on - strand, within Atu5435at 429.066 kb on - strand, within Atu5435

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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426,286 + Atu5433 0.22 +0.6
426,294 - Atu5433 0.23 +0.0
426,325 + Atu5433 0.26 +3.2
426,343 + Atu5433 0.27 -0.8
426,343 + Atu5433 0.27 -0.3
426,368 + Atu5433 0.30 -0.1
426,370 + Atu5433 0.30 +0.5
426,415 + Atu5433 0.35 -0.6
426,438 - Atu5433 0.37 +0.0
426,446 + Atu5433 0.38 -0.5
426,593 + Atu5433 0.52 -1.1
426,593 + Atu5433 0.52 +0.9
426,595 + Atu5433 0.52 -1.1
426,601 - Atu5433 0.53 -0.2
426,601 - Atu5433 0.53 +0.8
426,603 - Atu5433 0.53 -0.0
426,627 + Atu5433 0.56 +1.8
426,656 + Atu5433 0.58 +0.3
426,689 - Atu5433 0.62 +0.2
426,715 - Atu5433 0.64 -0.9
426,815 - Atu5433 0.74 +0.4
426,815 - Atu5433 0.74 +0.3
426,826 + Atu5433 0.75 -0.8
426,834 - Atu5433 0.76 +0.9
426,903 - Atu5433 0.83 +1.4
426,903 - Atu5433 0.83 -0.1
426,922 - Atu5433 0.85 -0.0
426,973 - Atu5433 0.90 -2.4
426,982 + -0.4
426,985 - -1.0
426,993 - -0.3
427,078 + -0.7
427,144 + +0.6
427,150 - +0.5
427,164 - +0.1
427,170 + -1.1
427,170 + -1.4
427,170 + +0.5
427,211 + +1.1
427,223 + +0.6
427,235 + -0.5
427,301 + -2.0
427,301 + +0.8
427,301 + +0.5
427,301 + +0.9
427,309 - Atu5434 0.11 -2.3
427,309 - Atu5434 0.11 -1.2
427,309 - Atu5434 0.11 -1.2
427,309 - Atu5434 0.11 -2.4
427,309 - Atu5434 0.11 +0.0
427,309 - Atu5434 0.11 -0.8
427,361 - Atu5434 0.16 -0.5
427,388 - Atu5434 0.19 -0.0
427,388 - Atu5434 0.19 -0.2
427,405 - Atu5434 0.21 -1.5
427,430 + Atu5434 0.24 -0.2
427,430 + Atu5434 0.24 +0.2
427,438 - Atu5434 0.25 -0.8
427,486 - Atu5434 0.30 +1.6
427,524 + Atu5434 0.34 +0.7
427,532 - Atu5434 0.35 +0.1
427,544 + Atu5434 0.36 +0.7
427,544 + Atu5434 0.36 +0.5
427,638 + Atu5434 0.46 +0.8
427,658 + Atu5434 0.49 -0.7
427,658 + Atu5434 0.49 +0.6
427,663 + Atu5434 0.49 +0.8
427,666 - Atu5434 0.49 -0.2
427,684 + Atu5434 0.51 +0.8
427,806 - Atu5434 0.65 +0.9
427,811 - Atu5434 0.65 +0.5
427,816 - Atu5434 0.66 +0.9
427,829 - Atu5434 0.67 -0.3
427,842 - Atu5434 0.69 -0.4
427,953 + Atu5434 0.81 -1.0
427,961 - Atu5434 0.81 -0.7
427,961 - Atu5434 0.81 -2.0
427,963 + Atu5434 0.82 -1.3
428,039 - Atu5434 0.90 +0.7
428,061 - +0.1
428,099 - +1.0
428,200 - -0.1
428,264 + +0.7
428,402 + Atu5435 0.21 +1.9
428,402 + Atu5435 0.21 -1.4
428,425 + Atu5435 0.23 +0.2
428,504 + Atu5435 0.30 +0.8
428,512 - Atu5435 0.31 +1.8
428,548 - Atu5435 0.34 +0.3
428,555 + Atu5435 0.34 +0.4
428,573 + Atu5435 0.36 +1.5
428,580 - Atu5435 0.36 +0.2
428,580 - Atu5435 0.36 +0.7
428,676 - Atu5435 0.45 -0.6
428,698 + Atu5435 0.47 +1.8
428,698 + Atu5435 0.47 -1.6
428,698 + Atu5435 0.47 +0.9
428,706 - Atu5435 0.47 -0.3
428,736 - Atu5435 0.50 +0.8
428,750 + Atu5435 0.51 -2.4
428,766 + Atu5435 0.52 +2.9
428,774 - Atu5435 0.53 -0.5
428,776 + Atu5435 0.53 -1.5
428,779 - Atu5435 0.53 +0.5
428,837 - Atu5435 0.58 +4.4
428,869 + Atu5435 0.61 +0.1
428,904 - Atu5435 0.64 -0.2
428,922 + Atu5435 0.66 -2.5
428,923 + Atu5435 0.66 +0.9
428,927 + Atu5435 0.66 -0.4
428,935 - Atu5435 0.67 +1.9
428,968 - Atu5435 0.70 +0.7
428,968 - Atu5435 0.70 -0.9
429,010 - Atu5435 0.73 -0.4
429,066 - Atu5435 0.78 +0.1

Or see this region's nucleotide sequence