Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5431 and Atu5432 are separated by 178 nucleotides Atu5432 and Atu5433 are separated by 424 nucleotides Atu5433 and Atu5434 are separated by 133 nucleotides
Atu5431: Atu5431 - hypothetical protein, at 424,764 to 425,153
Atu5431
Atu5432: Atu5432 - hypothetical protein, at 425,332 to 425,640
Atu5432
Atu5433: Atu5433 - LacI family transcription regulator, at 426,065 to 427,075
Atu5433
Atu5434: Atu5434 - hypothetical protein, at 427,209 to 428,132
Atu5434
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.089 kb on + strand, within Atu5431 at 425.094 kb on + strand, within Atu5431 at 425.113 kb on + strand, within Atu5431 at 425.121 kb on - strand at 425.151 kb on - strand at 425.167 kb on - strand at 425.257 kb on + strand at 425.263 kb on + strand at 425.270 kb on + strand at 425.278 kb on - strand at 425.359 kb on + strand at 425.409 kb on + strand, within Atu5432 at 425.502 kb on - strand, within Atu5432 at 425.596 kb on - strand, within Atu5432 at 425.618 kb on + strand at 425.618 kb on + strand at 425.710 kb on - strand at 425.721 kb on - strand at 425.783 kb on - strand at 425.803 kb on + strand at 425.818 kb on + strand at 425.830 kb on - strand at 425.850 kb on - strand at 425.850 kb on - strand at 425.872 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.874 kb on - strand at 425.952 kb on - strand at 425.959 kb on + strand at 425.959 kb on + strand at 425.992 kb on + strand at 426.000 kb on - strand at 426.000 kb on - strand at 426.051 kb on + strand at 426.059 kb on - strand at 426.286 kb on + strand, within Atu5433 at 426.294 kb on - strand, within Atu5433 at 426.325 kb on + strand, within Atu5433 at 426.343 kb on + strand, within Atu5433 at 426.343 kb on + strand, within Atu5433 at 426.368 kb on + strand, within Atu5433 at 426.370 kb on + strand, within Atu5433 at 426.415 kb on + strand, within Atu5433 at 426.438 kb on - strand, within Atu5433 at 426.446 kb on + strand, within Atu5433 at 426.593 kb on + strand, within Atu5433 at 426.593 kb on + strand, within Atu5433 at 426.595 kb on + strand, within Atu5433 at 426.601 kb on - strand, within Atu5433 at 426.601 kb on - strand, within Atu5433 at 426.603 kb on - strand, within Atu5433 at 426.627 kb on + strand, within Atu5433 at 426.656 kb on + strand, within Atu5433 at 426.689 kb on - strand, within Atu5433 at 426.715 kb on - strand, within Atu5433 at 426.815 kb on - strand, within Atu5433 at 426.815 kb on - strand, within Atu5433 at 426.826 kb on + strand, within Atu5433 at 426.834 kb on - strand, within Atu5433 at 426.903 kb on - strand, within Atu5433 at 426.903 kb on - strand, within Atu5433 at 426.922 kb on - strand, within Atu5433 at 426.973 kb on - strand, within Atu5433 at 426.982 kb on + strand at 426.985 kb on - strand at 426.993 kb on - strand at 427.078 kb on + strand at 427.144 kb on + strand at 427.150 kb on - strand at 427.164 kb on - strand at 427.170 kb on + strand at 427.170 kb on + strand at 427.170 kb on + strand at 427.211 kb on + strand at 427.223 kb on + strand at 427.235 kb on + strand at 427.301 kb on + strand at 427.301 kb on + strand at 427.301 kb on + strand at 427.301 kb on + strand at 427.309 kb on - strand, within Atu5434 at 427.309 kb on - strand, within Atu5434 at 427.309 kb on - strand, within Atu5434 at 427.309 kb on - strand, within Atu5434 at 427.309 kb on - strand, within Atu5434 at 427.309 kb on - strand, within Atu5434 at 427.361 kb on - strand, within Atu5434 at 427.388 kb on - strand, within Atu5434 at 427.388 kb on - strand, within Atu5434 at 427.405 kb on - strand, within Atu5434 at 427.430 kb on + strand, within Atu5434 at 427.430 kb on + strand, within Atu5434 at 427.438 kb on - strand, within Atu5434 at 427.486 kb on - strand, within Atu5434 at 427.524 kb on + strand, within Atu5434 at 427.532 kb on - strand, within Atu5434 at 427.544 kb on + strand, within Atu5434 at 427.544 kb on + strand, within Atu5434 at 427.638 kb on + strand, within Atu5434 at 427.658 kb on + strand, within Atu5434 at 427.658 kb on + strand, within Atu5434 at 427.663 kb on + strand, within Atu5434 at 427.666 kb on - strand, within Atu5434 at 427.684 kb on + strand, within Atu5434 at 427.806 kb on - strand, within Atu5434 at 427.811 kb on - strand, within Atu5434 at 427.816 kb on - strand, within Atu5434 at 427.829 kb on - strand, within Atu5434 at 427.842 kb on - strand, within Atu5434 at 427.953 kb on + strand, within Atu5434 at 427.961 kb on - strand, within Atu5434 at 427.961 kb on - strand, within Atu5434 at 427.963 kb on + strand, within Atu5434 at 428.039 kb on - strand, within Atu5434 at 428.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 425,089 + Atu5431 0.83 -0.7 425,094 + Atu5431 0.85 -0.4 425,113 + Atu5431 0.89 -0.5 425,121 - -0.0 425,151 - -1.8 425,167 - +0.6 425,257 + -0.2 425,263 + -0.0 425,270 + -0.2 425,278 - +0.8 425,359 + -0.5 425,409 + Atu5432 0.25 -1.4 425,502 - Atu5432 0.55 -0.5 425,596 - Atu5432 0.85 +1.2 425,618 + +0.1 425,618 + +0.5 425,710 - +0.2 425,721 - +0.8 425,783 - +0.9 425,803 + -1.1 425,818 + -0.2 425,830 - -1.6 425,850 - -0.2 425,850 - -0.2 425,872 - +0.4 425,874 - -0.0 425,874 - +0.7 425,874 - +0.0 425,874 - +3.0 425,952 - -2.8 425,959 + +1.4 425,959 + -0.8 425,992 + -1.5 426,000 - +0.4 426,000 - -0.3 426,051 + -0.1 426,059 - +0.2 426,286 + Atu5433 0.22 +0.6 426,294 - Atu5433 0.23 +0.0 426,325 + Atu5433 0.26 +3.2 426,343 + Atu5433 0.27 -0.8 426,343 + Atu5433 0.27 -0.3 426,368 + Atu5433 0.30 -0.1 426,370 + Atu5433 0.30 +0.5 426,415 + Atu5433 0.35 -0.6 426,438 - Atu5433 0.37 +0.0 426,446 + Atu5433 0.38 -0.5 426,593 + Atu5433 0.52 -1.1 426,593 + Atu5433 0.52 +0.9 426,595 + Atu5433 0.52 -1.1 426,601 - Atu5433 0.53 -0.2 426,601 - Atu5433 0.53 +0.8 426,603 - Atu5433 0.53 -0.0 426,627 + Atu5433 0.56 +1.8 426,656 + Atu5433 0.58 +0.3 426,689 - Atu5433 0.62 +0.2 426,715 - Atu5433 0.64 -0.9 426,815 - Atu5433 0.74 +0.4 426,815 - Atu5433 0.74 +0.3 426,826 + Atu5433 0.75 -0.8 426,834 - Atu5433 0.76 +0.9 426,903 - Atu5433 0.83 +1.4 426,903 - Atu5433 0.83 -0.1 426,922 - Atu5433 0.85 -0.0 426,973 - Atu5433 0.90 -2.4 426,982 + -0.4 426,985 - -1.0 426,993 - -0.3 427,078 + -0.7 427,144 + +0.6 427,150 - +0.5 427,164 - +0.1 427,170 + -1.1 427,170 + -1.4 427,170 + +0.5 427,211 + +1.1 427,223 + +0.6 427,235 + -0.5 427,301 + -2.0 427,301 + +0.8 427,301 + +0.5 427,301 + +0.9 427,309 - Atu5434 0.11 -2.3 427,309 - Atu5434 0.11 -1.2 427,309 - Atu5434 0.11 -1.2 427,309 - Atu5434 0.11 -2.4 427,309 - Atu5434 0.11 +0.0 427,309 - Atu5434 0.11 -0.8 427,361 - Atu5434 0.16 -0.5 427,388 - Atu5434 0.19 -0.0 427,388 - Atu5434 0.19 -0.2 427,405 - Atu5434 0.21 -1.5 427,430 + Atu5434 0.24 -0.2 427,430 + Atu5434 0.24 +0.2 427,438 - Atu5434 0.25 -0.8 427,486 - Atu5434 0.30 +1.6 427,524 + Atu5434 0.34 +0.7 427,532 - Atu5434 0.35 +0.1 427,544 + Atu5434 0.36 +0.7 427,544 + Atu5434 0.36 +0.5 427,638 + Atu5434 0.46 +0.8 427,658 + Atu5434 0.49 -0.7 427,658 + Atu5434 0.49 +0.6 427,663 + Atu5434 0.49 +0.8 427,666 - Atu5434 0.49 -0.2 427,684 + Atu5434 0.51 +0.8 427,806 - Atu5434 0.65 +0.9 427,811 - Atu5434 0.65 +0.5 427,816 - Atu5434 0.66 +0.9 427,829 - Atu5434 0.67 -0.3 427,842 - Atu5434 0.69 -0.4 427,953 + Atu5434 0.81 -1.0 427,961 - Atu5434 0.81 -0.7 427,961 - Atu5434 0.81 -2.0 427,963 + Atu5434 0.82 -1.3 428,039 - Atu5434 0.90 +0.7 428,061 - +0.1
Or see this region's nucleotide sequence