Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5145 and Atu5146 are separated by 39 nucleotides Atu5146 and Atu5147 are separated by 61 nucleotides Atu5147 and Atu5148 are separated by 83 nucleotides Atu5148 and Atu5149 are separated by 220 nucleotides Atu5149 and Atu5150 are separated by 76 nucleotides
Atu5145: Atu5145 - acetyltransferase, at 151,070 to 151,528
Atu5145
Atu5146: Atu5146 - hypothetical protein, at 151,568 to 151,765
Atu5146
Atu5147: Atu5147 - Mg(2+) transport ATPase, at 151,827 to 152,411
Atu5147
Atu5148: Atu5148 - hypothetical protein, at 152,495 to 152,899
Atu5148
Atu5149: Atu5149 - acetyltransferase, at 153,120 to 153,662
Atu5149
Atu5150: Atu5150 - glutathione S-transferase, at 153,739 to 154,374
Atu5150
Position (kb) 152
153 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 151.556 kb on - strand at 151.577 kb on + strand at 151.595 kb on - strand, within Atu5146 at 151.692 kb on + strand, within Atu5146 at 151.721 kb on + strand, within Atu5146 at 151.792 kb on - strand at 151.800 kb on + strand at 151.828 kb on - strand at 151.945 kb on - strand, within Atu5147 at 151.956 kb on - strand, within Atu5147 at 151.986 kb on + strand, within Atu5147 at 152.012 kb on + strand, within Atu5147 at 152.056 kb on - strand, within Atu5147 at 152.064 kb on - strand, within Atu5147 at 152.154 kb on + strand, within Atu5147 at 152.162 kb on - strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.210 kb on - strand, within Atu5147 at 152.262 kb on - strand, within Atu5147 at 152.323 kb on - strand, within Atu5147 at 152.330 kb on + strand, within Atu5147 at 152.354 kb on + strand at 152.355 kb on + strand at 152.375 kb on + strand at 152.433 kb on + strand at 152.592 kb on - strand, within Atu5148 at 152.665 kb on - strand, within Atu5148 at 152.672 kb on - strand, within Atu5148 at 152.712 kb on + strand, within Atu5148 at 152.717 kb on + strand, within Atu5148 at 152.725 kb on - strand, within Atu5148 at 152.730 kb on - strand, within Atu5148 at 152.742 kb on + strand, within Atu5148 at 152.832 kb on - strand, within Atu5148 at 152.907 kb on - strand at 152.924 kb on - strand at 152.924 kb on - strand at 152.924 kb on - strand at 153.069 kb on - strand at 153.125 kb on + strand at 153.133 kb on - strand at 153.133 kb on - strand at 153.133 kb on - strand at 153.192 kb on + strand, within Atu5149 at 153.258 kb on + strand, within Atu5149 at 153.266 kb on - strand, within Atu5149 at 153.304 kb on + strand, within Atu5149 at 153.326 kb on - strand, within Atu5149 at 153.399 kb on + strand, within Atu5149 at 153.407 kb on - strand, within Atu5149 at 153.421 kb on + strand, within Atu5149 at 153.439 kb on - strand, within Atu5149 at 153.537 kb on + strand, within Atu5149 at 153.558 kb on - strand, within Atu5149 at 153.599 kb on + strand, within Atu5149 at 153.607 kb on - strand, within Atu5149 at 153.635 kb on - strand at 153.635 kb on - strand at 153.673 kb on - strand at 153.710 kb on + strand at 153.718 kb on - strand at 153.750 kb on - strand at 153.782 kb on - strand at 153.820 kb on - strand, within Atu5150 at 153.856 kb on + strand, within Atu5150 at 153.894 kb on - strand, within Atu5150 at 153.896 kb on - strand, within Atu5150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 151,556 - -5.0 151,577 + -1.7 151,595 - Atu5146 0.14 -0.5 151,692 + Atu5146 0.63 -1.7 151,721 + Atu5146 0.77 -2.3 151,792 - -1.2 151,800 + -2.4 151,828 - -1.5 151,945 - Atu5147 0.20 -0.3 151,956 - Atu5147 0.22 +0.4 151,986 + Atu5147 0.27 -1.1 152,012 + Atu5147 0.32 -2.0 152,056 - Atu5147 0.39 -0.9 152,064 - Atu5147 0.41 -1.9 152,154 + Atu5147 0.56 -0.1 152,162 - Atu5147 0.57 -1.5 152,202 + Atu5147 0.64 -1.0 152,202 + Atu5147 0.64 +1.2 152,202 + Atu5147 0.64 -0.7 152,202 + Atu5147 0.64 +0.0 152,210 - Atu5147 0.65 -1.0 152,262 - Atu5147 0.74 +1.0 152,323 - Atu5147 0.85 -1.2 152,330 + Atu5147 0.86 -0.6 152,354 + -1.2 152,355 + -1.2 152,375 + -0.5 152,433 + -0.6 152,592 - Atu5148 0.24 -0.4 152,665 - Atu5148 0.42 +0.7 152,672 - Atu5148 0.44 -1.8 152,712 + Atu5148 0.54 +0.4 152,717 + Atu5148 0.55 -0.8 152,725 - Atu5148 0.57 +0.2 152,730 - Atu5148 0.58 +0.3 152,742 + Atu5148 0.61 +0.6 152,832 - Atu5148 0.83 -0.4 152,907 - +2.5 152,924 - -1.0 152,924 - -0.0 152,924 - +0.8 153,069 - -2.0 153,125 + -0.1 153,133 - -1.0 153,133 - -0.9 153,133 - -1.4 153,192 + Atu5149 0.13 +0.9 153,258 + Atu5149 0.25 +0.6 153,266 - Atu5149 0.27 -1.5 153,304 + Atu5149 0.34 +0.1 153,326 - Atu5149 0.38 -1.3 153,399 + Atu5149 0.51 -1.2 153,407 - Atu5149 0.53 -0.4 153,421 + Atu5149 0.55 +2.2 153,439 - Atu5149 0.59 -1.1 153,537 + Atu5149 0.77 +0.5 153,558 - Atu5149 0.81 +0.8 153,599 + Atu5149 0.88 -0.1 153,607 - Atu5149 0.90 -1.2 153,635 - +0.6 153,635 - +0.4 153,673 - -1.2 153,710 + +0.1 153,718 - +0.6 153,750 - +0.8 153,782 - -0.4 153,820 - Atu5150 0.13 +0.2 153,856 + Atu5150 0.18 +4.6 153,894 - Atu5150 0.24 +0.4 153,896 - Atu5150 0.25 -1.0
Or see this region's nucleotide sequence