Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3636 and Atu3637 are separated by 157 nucleotides Atu3637 and Atu3638 are separated by 258 nucleotides Atu3638 and Atu3639 are separated by 3 nucleotides Atu3639 and Atu3640 are separated by 2 nucleotides
Atu3636: Atu3636 - hypothetical protein, at 689,286 to 689,732
Atu3636
Atu3637: Atu3637 - 30S ribosomal protein S21, at 689,890 to 690,120
Atu3637
Atu3638: Atu3638 - hypothetical protein, at 690,379 to 691,503
Atu3638
Atu3639: Atu3639 - hypothetical protein, at 691,507 to 692,238
Atu3639
Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821
Atu3640
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 689.388 kb on + strand, within Atu3636 at 689.448 kb on + strand, within Atu3636 at 689.458 kb on + strand, within Atu3636 at 689.561 kb on + strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.564 kb on - strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.566 kb on + strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.574 kb on - strand, within Atu3636 at 689.596 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.606 kb on - strand, within Atu3636 at 689.683 kb on - strand, within Atu3636 at 689.880 kb on - strand at 689.998 kb on + strand, within Atu3637 at 690.176 kb on + strand at 690.192 kb on - strand at 690.417 kb on - strand at 690.434 kb on - strand at 690.459 kb on + strand at 690.467 kb on - strand at 690.492 kb on - strand, within Atu3638 at 690.543 kb on + strand, within Atu3638 at 690.560 kb on + strand, within Atu3638 at 690.568 kb on - strand, within Atu3638 at 690.639 kb on + strand, within Atu3638 at 690.647 kb on - strand, within Atu3638 at 690.759 kb on + strand, within Atu3638 at 690.767 kb on - strand, within Atu3638 at 690.825 kb on - strand, within Atu3638 at 690.864 kb on + strand, within Atu3638 at 691.057 kb on + strand, within Atu3638 at 691.065 kb on - strand, within Atu3638 at 691.068 kb on + strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.075 kb on - strand, within Atu3638 at 691.096 kb on + strand, within Atu3638 at 691.112 kb on + strand, within Atu3638 at 691.182 kb on + strand, within Atu3638 at 691.187 kb on + strand, within Atu3638 at 691.214 kb on + strand, within Atu3638 at 691.252 kb on - strand, within Atu3638 at 691.252 kb on - strand, within Atu3638 at 691.318 kb on - strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.362 kb on + strand, within Atu3638 at 691.363 kb on + strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.456 kb on + strand at 691.506 kb on - strand at 691.511 kb on - strand at 691.544 kb on - strand at 692.261 kb on + strand at 692.319 kb on + strand at 692.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 689,388 + Atu3636 0.23 -1.8 689,448 + Atu3636 0.36 -1.2 689,458 + Atu3636 0.38 +1.0 689,561 + Atu3636 0.62 +0.2 689,564 - Atu3636 0.62 +0.8 689,564 - Atu3636 0.62 +0.6 689,566 + Atu3636 0.63 -0.4 689,566 + Atu3636 0.63 +0.3 689,566 + Atu3636 0.63 +0.4 689,566 + Atu3636 0.63 +0.8 689,566 + Atu3636 0.63 -0.3 689,566 + Atu3636 0.63 +0.5 689,574 - Atu3636 0.64 +0.7 689,574 - Atu3636 0.64 +0.5 689,596 - Atu3636 0.69 +0.8 689,606 - Atu3636 0.72 +1.0 689,606 - Atu3636 0.72 -0.3 689,683 - Atu3636 0.89 +2.4 689,880 - +0.0 689,998 + Atu3637 0.47 +0.7 690,176 + +1.5 690,192 - -1.8 690,417 - +0.3 690,434 - +0.3 690,459 + +0.1 690,467 - +0.6 690,492 - Atu3638 0.10 -1.4 690,543 + Atu3638 0.15 +0.3 690,560 + Atu3638 0.16 +0.8 690,568 - Atu3638 0.17 +0.2 690,639 + Atu3638 0.23 +0.2 690,647 - Atu3638 0.24 +3.0 690,759 + Atu3638 0.34 -0.1 690,767 - Atu3638 0.34 +0.2 690,825 - Atu3638 0.40 +2.2 690,864 + Atu3638 0.43 -0.2 691,057 + Atu3638 0.60 +0.4 691,065 - Atu3638 0.61 +0.2 691,068 + Atu3638 0.61 -2.5 691,075 - Atu3638 0.62 -1.0 691,075 - Atu3638 0.62 -0.4 691,075 - Atu3638 0.62 -0.1 691,096 + Atu3638 0.64 +0.9 691,112 + Atu3638 0.65 -1.6 691,182 + Atu3638 0.71 +0.4 691,187 + Atu3638 0.72 -1.0 691,214 + Atu3638 0.74 +0.1 691,252 - Atu3638 0.78 +0.6 691,252 - Atu3638 0.78 +1.8 691,318 - Atu3638 0.83 +3.3 691,323 + Atu3638 0.84 +0.2 691,323 + Atu3638 0.84 -2.8 691,323 + Atu3638 0.84 +1.1 691,323 + Atu3638 0.84 -0.3 691,323 + Atu3638 0.84 +0.3 691,323 + Atu3638 0.84 +0.4 691,323 + Atu3638 0.84 +0.3 691,331 - Atu3638 0.85 -1.1 691,331 - Atu3638 0.85 +1.2 691,331 - Atu3638 0.85 +1.5 691,331 - Atu3638 0.85 -0.2 691,331 - Atu3638 0.85 +0.5 691,362 + Atu3638 0.87 -0.3 691,363 + Atu3638 0.87 -0.3 691,381 - Atu3638 0.89 -0.6 691,381 - Atu3638 0.89 +0.8 691,456 + -0.8 691,506 - +0.6 691,511 - -2.7 691,544 - +0.6 692,261 + -0.5 692,319 + +0.1 692,386 + -0.0
Or see this region's nucleotide sequence