Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3199 and Atu3200 are separated by 52 nucleotides Atu3200 and Atu3201 are separated by 193 nucleotides Atu3201 and Atu3202 are separated by 129 nucleotides
Atu3199: Atu3199 - ribose ABC transporter permease, at 207,911 to 208,912
Atu3199
Atu3200: Atu3200 - ribose ABC transporter ATPase, at 208,965 to 210,488
Atu3200
Atu3201: Atu3201 - TetR family transcriptional regulator, at 210,682 to 211,305
Atu3201
Atu3202: Atu3202 - RND multidrug efflux transporter, at 211,435 to 214,569
Atu3202
Position (kb) 208
209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 207.967 kb on + strand at 208.075 kb on - strand, within Atu3199 at 208.079 kb on - strand, within Atu3199 at 208.145 kb on + strand, within Atu3199 at 208.158 kb on - strand, within Atu3199 at 208.202 kb on - strand, within Atu3199 at 208.287 kb on + strand, within Atu3199 at 208.306 kb on - strand, within Atu3199 at 208.308 kb on + strand, within Atu3199 at 208.313 kb on + strand, within Atu3199 at 208.425 kb on - strand, within Atu3199 at 208.577 kb on - strand, within Atu3199 at 208.587 kb on + strand, within Atu3199 at 208.621 kb on - strand, within Atu3199 at 208.684 kb on + strand, within Atu3199 at 208.701 kb on - strand, within Atu3199 at 208.855 kb on + strand at 208.855 kb on + strand at 208.863 kb on - strand at 208.864 kb on + strand at 208.872 kb on - strand at 208.910 kb on - strand at 208.934 kb on + strand at 209.104 kb on - strand at 209.161 kb on + strand, within Atu3200 at 209.259 kb on + strand, within Atu3200 at 209.341 kb on - strand, within Atu3200 at 209.428 kb on + strand, within Atu3200 at 209.436 kb on - strand, within Atu3200 at 209.436 kb on - strand, within Atu3200 at 209.446 kb on + strand, within Atu3200 at 209.487 kb on + strand, within Atu3200 at 209.572 kb on + strand, within Atu3200 at 209.580 kb on - strand, within Atu3200 at 209.582 kb on + strand, within Atu3200 at 209.696 kb on - strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.728 kb on + strand, within Atu3200 at 209.736 kb on - strand, within Atu3200 at 209.886 kb on - strand, within Atu3200 at 209.910 kb on - strand, within Atu3200 at 209.928 kb on - strand, within Atu3200 at 209.992 kb on + strand, within Atu3200 at 210.247 kb on + strand, within Atu3200 at 210.255 kb on + strand, within Atu3200 at 210.369 kb on + strand at 210.386 kb on - strand at 210.419 kb on - strand at 210.445 kb on + strand at 210.450 kb on + strand at 210.453 kb on - strand at 210.484 kb on + strand at 210.534 kb on + strand at 210.663 kb on - strand at 210.671 kb on - strand at 210.673 kb on - strand at 210.680 kb on + strand at 210.680 kb on + strand at 210.719 kb on + strand at 210.742 kb on - strand at 210.778 kb on + strand, within Atu3201 at 210.778 kb on + strand, within Atu3201 at 210.778 kb on + strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.786 kb on - strand, within Atu3201 at 210.792 kb on - strand, within Atu3201 at 210.799 kb on - strand, within Atu3201 at 210.854 kb on + strand, within Atu3201 at 210.862 kb on - strand, within Atu3201 at 210.881 kb on + strand, within Atu3201 at 210.893 kb on + strand, within Atu3201 at 210.907 kb on + strand, within Atu3201 at 211.048 kb on - strand, within Atu3201 at 211.058 kb on - strand, within Atu3201 at 211.076 kb on - strand, within Atu3201 at 211.297 kb on - strand at 211.302 kb on - strand at 211.304 kb on + strand at 211.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 207,967 + +0.3 208,075 - Atu3199 0.16 -0.1 208,079 - Atu3199 0.17 +0.5 208,145 + Atu3199 0.23 -0.0 208,158 - Atu3199 0.25 -1.0 208,202 - Atu3199 0.29 +0.3 208,287 + Atu3199 0.38 -0.4 208,306 - Atu3199 0.39 +1.8 208,308 + Atu3199 0.40 -0.6 208,313 + Atu3199 0.40 -1.1 208,425 - Atu3199 0.51 -0.3 208,577 - Atu3199 0.66 -1.1 208,587 + Atu3199 0.67 -0.2 208,621 - Atu3199 0.71 -1.9 208,684 + Atu3199 0.77 -2.9 208,701 - Atu3199 0.79 +0.3 208,855 + +0.1 208,855 + -0.8 208,863 - +1.8 208,864 + -0.1 208,872 - -2.2 208,910 - -0.0 208,934 + +2.4 209,104 - -0.4 209,161 + Atu3200 0.13 +0.9 209,259 + Atu3200 0.19 +1.0 209,341 - Atu3200 0.25 -1.5 209,428 + Atu3200 0.30 +0.7 209,436 - Atu3200 0.31 +1.1 209,436 - Atu3200 0.31 +0.3 209,446 + Atu3200 0.32 +0.4 209,487 + Atu3200 0.34 +0.5 209,572 + Atu3200 0.40 +1.4 209,580 - Atu3200 0.40 +1.7 209,582 + Atu3200 0.40 -1.9 209,696 - Atu3200 0.48 +0.0 209,728 + Atu3200 0.50 +0.2 209,728 + Atu3200 0.50 +0.9 209,736 - Atu3200 0.51 +0.4 209,886 - Atu3200 0.60 -0.6 209,910 - Atu3200 0.62 +1.2 209,928 - Atu3200 0.63 +1.0 209,992 + Atu3200 0.67 -0.8 210,247 + Atu3200 0.84 +0.1 210,255 + Atu3200 0.85 -0.0 210,369 + -0.2 210,386 - +2.8 210,419 - +0.5 210,445 + -0.9 210,450 + -2.4 210,453 - -0.0 210,484 + -0.7 210,534 + -0.4 210,663 - +0.6 210,671 - +0.5 210,673 - -1.3 210,680 + -3.4 210,680 + -0.9 210,719 + -1.1 210,742 - -0.6 210,778 + Atu3201 0.15 -2.2 210,778 + Atu3201 0.15 -1.9 210,778 + Atu3201 0.15 +0.4 210,786 - Atu3201 0.17 -0.3 210,786 - Atu3201 0.17 +0.9 210,786 - Atu3201 0.17 -0.3 210,786 - Atu3201 0.17 -0.5 210,792 - Atu3201 0.18 +0.7 210,799 - Atu3201 0.19 +0.8 210,854 + Atu3201 0.28 -2.1 210,862 - Atu3201 0.29 -1.0 210,881 + Atu3201 0.32 -1.2 210,893 + Atu3201 0.34 -0.2 210,907 + Atu3201 0.36 -2.3 211,048 - Atu3201 0.59 +0.2 211,058 - Atu3201 0.60 +0.3 211,076 - Atu3201 0.63 -0.7 211,297 - -0.4 211,302 - +0.1 211,304 + -0.0 211,469 + -0.3
Or see this region's nucleotide sequence