Strain Fitness in Agrobacterium fabrum C58 around Atu3070

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3068 and Atu3069 are separated by 24 nucleotidesAtu3069 and Atu3070 are separated by 14 nucleotidesAtu3070 and Atu3071 are separated by 103 nucleotides Atu3068: Atu3068 - ribokinase, at 70,605 to 71,501 Atu3068 Atu3069: Atu3069 - hypothetical protein, at 71,526 to 72,368 Atu3069 Atu3070: Atu3070 - allantoate amidohydrolase, at 72,383 to 73,624 Atu3070 Atu3071: Atu3071 - hypothetical protein, at 73,728 to 74,213 Atu3071 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 71.442 kb on - strandat 71.460 kb on + strandat 71.526 kb on - strandat 71.667 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.781 kb on + strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.930 kb on - strand, within Atu3069at 71.991 kb on + strand, within Atu3069at 71.993 kb on + strand, within Atu3069at 71.998 kb on + strand, within Atu3069at 72.003 kb on + strand, within Atu3069at 72.053 kb on - strand, within Atu3069at 72.066 kb on - strand, within Atu3069at 72.208 kb on + strand, within Atu3069at 72.259 kb on - strand, within Atu3069at 72.261 kb on + strand, within Atu3069at 72.289 kb on - strandat 72.306 kb on - strandat 72.371 kb on - strandat 72.432 kb on + strandat 72.440 kb on - strandat 72.450 kb on - strandat 72.493 kb on + strandat 72.624 kb on + strand, within Atu3070at 72.697 kb on + strand, within Atu3070at 72.782 kb on + strand, within Atu3070at 72.841 kb on - strand, within Atu3070at 72.975 kb on + strand, within Atu3070at 72.983 kb on - strand, within Atu3070at 73.226 kb on + strand, within Atu3070at 73.239 kb on - strand, within Atu3070at 73.261 kb on + strand, within Atu3070at 73.408 kb on + strand, within Atu3070at 73.411 kb on - strand, within Atu3070at 73.423 kb on + strand, within Atu3070at 73.431 kb on - strand, within Atu3070at 73.437 kb on - strand, within Atu3070at 73.540 kb on + strandat 73.548 kb on - strandat 73.563 kb on - strandat 73.570 kb on - strandat 73.693 kb on + strandat 73.703 kb on + strandat 73.715 kb on + strandat 73.879 kb on - strand, within Atu3071at 73.926 kb on - strand, within Atu3071at 73.991 kb on - strand, within Atu3071at 73.992 kb on - strand, within Atu3071at 73.998 kb on + strand, within Atu3071at 74.039 kb on - strand, within Atu3071at 74.118 kb on - strand, within Atu3071at 74.159 kb on + strand, within Atu3071at 74.257 kb on + strandat 74.262 kb on + strandat 74.270 kb on - strandat 74.270 kb on - strandat 74.340 kb on - strandat 74.342 kb on + strandat 74.342 kb on - strandat 74.415 kb on + strandat 74.504 kb on + strandat 74.552 kb on - strandat 74.553 kb on + strandat 74.610 kb on - strandat 74.616 kb on + strandat 74.616 kb on + strandat 74.616 kb on + strandat 74.624 kb on - strandat 74.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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71,442 - +0.2
71,460 + +0.5
71,526 - -0.7
71,667 + Atu3069 0.17 +1.7
71,736 + Atu3069 0.25 +0.5
71,736 + Atu3069 0.25 +1.2
71,736 + Atu3069 0.25 -0.7
71,781 + Atu3069 0.30 +0.8
71,789 - Atu3069 0.31 +0.8
71,789 - Atu3069 0.31 +1.2
71,901 - Atu3069 0.44 +0.9
71,901 - Atu3069 0.44 -0.4
71,930 - Atu3069 0.48 +1.7
71,991 + Atu3069 0.55 +0.3
71,993 + Atu3069 0.55 +0.3
71,998 + Atu3069 0.56 +1.8
72,003 + Atu3069 0.57 +2.6
72,053 - Atu3069 0.63 +0.2
72,066 - Atu3069 0.64 -0.4
72,208 + Atu3069 0.81 -1.3
72,259 - Atu3069 0.87 +0.1
72,261 + Atu3069 0.87 +0.3
72,289 - +0.4
72,306 - -0.5
72,371 - +0.9
72,432 + +1.8
72,440 - -0.0
72,450 - +0.2
72,493 + -1.0
72,624 + Atu3070 0.19 +0.1
72,697 + Atu3070 0.25 +0.1
72,782 + Atu3070 0.32 -0.3
72,841 - Atu3070 0.37 +1.9
72,975 + Atu3070 0.48 -0.9
72,983 - Atu3070 0.48 +0.2
73,226 + Atu3070 0.68 -0.6
73,239 - Atu3070 0.69 -1.1
73,261 + Atu3070 0.71 -0.4
73,408 + Atu3070 0.83 -0.7
73,411 - Atu3070 0.83 -0.3
73,423 + Atu3070 0.84 -2.1
73,431 - Atu3070 0.84 -0.8
73,437 - Atu3070 0.85 +0.7
73,540 + +0.8
73,548 - +0.1
73,563 - +0.2
73,570 - +3.3
73,693 + -1.2
73,703 + -0.4
73,715 + +0.9
73,879 - Atu3071 0.31 -0.4
73,926 - Atu3071 0.41 +1.1
73,991 - Atu3071 0.54 +0.5
73,992 - Atu3071 0.54 -1.3
73,998 + Atu3071 0.56 +0.4
74,039 - Atu3071 0.64 +1.1
74,118 - Atu3071 0.80 -3.0
74,159 + Atu3071 0.89 +0.7
74,257 + +0.9
74,262 + -2.0
74,270 - -1.2
74,270 - +0.7
74,340 - +1.7
74,342 + -1.1
74,342 - +1.3
74,415 + +0.5
74,504 + -0.0
74,552 - -1.7
74,553 + +0.2
74,610 - -0.0
74,616 + +0.8
74,616 + +0.7
74,616 + -0.7
74,624 - +0.3
74,624 - -0.2

Or see this region's nucleotide sequence