Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3044 and Atu3045 are separated by 65 nucleotides Atu3045 and Atu3046 are separated by 66 nucleotides
Atu3044: Atu3044 - asparaginase, at 40,726 to 41,670
Atu3044
Atu3045: Atu3045 - hypothetical protein, at 41,736 to 42,083
Atu3045
Atu3046: Atu3046 - oxidoreductase, at 42,150 to 43,475
Atu3046
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 40.743 kb on + strand at 40.841 kb on + strand, within Atu3044 at 40.920 kb on + strand, within Atu3044 at 41.238 kb on + strand, within Atu3044 at 41.531 kb on + strand, within Atu3044 at 41.539 kb on - strand, within Atu3044 at 41.554 kb on - strand, within Atu3044 at 41.572 kb on + strand, within Atu3044 at 41.577 kb on + strand at 41.577 kb on + strand at 41.583 kb on - strand at 41.590 kb on + strand at 41.643 kb on + strand at 41.742 kb on - strand at 41.791 kb on - strand, within Atu3045 at 41.793 kb on + strand, within Atu3045 at 41.801 kb on - strand, within Atu3045 at 41.803 kb on + strand, within Atu3045 at 41.811 kb on - strand, within Atu3045 at 42.108 kb on - strand at 42.108 kb on - strand at 42.261 kb on + strand at 42.380 kb on - strand, within Atu3046 at 42.406 kb on - strand, within Atu3046 at 42.446 kb on + strand, within Atu3046 at 42.454 kb on - strand, within Atu3046 at 42.508 kb on + strand, within Atu3046 at 42.529 kb on + strand, within Atu3046 at 42.650 kb on - strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.732 kb on - strand, within Atu3046 at 42.745 kb on + strand, within Atu3046 at 42.765 kb on + strand, within Atu3046 at 42.770 kb on + strand, within Atu3046 at 42.784 kb on + strand, within Atu3046 at 42.794 kb on + strand, within Atu3046 at 42.807 kb on - strand, within Atu3046 at 42.816 kb on + strand, within Atu3046 at 42.921 kb on + strand, within Atu3046 at 42.989 kb on + strand, within Atu3046 at 42.997 kb on - strand, within Atu3046 at 43.032 kb on - strand, within Atu3046 at 43.066 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.074 kb on - strand, within Atu3046
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 40,743 + -0.1 40,841 + Atu3044 0.12 -0.4 40,920 + Atu3044 0.21 +0.5 41,238 + Atu3044 0.54 -1.1 41,531 + Atu3044 0.85 +0.4 41,539 - Atu3044 0.86 +0.7 41,554 - Atu3044 0.88 -1.9 41,572 + Atu3044 0.90 -2.1 41,577 + +0.9 41,577 + -0.9 41,583 - +1.7 41,590 + +1.6 41,643 + -1.6 41,742 - -0.7 41,791 - Atu3045 0.16 +0.8 41,793 + Atu3045 0.16 -0.7 41,801 - Atu3045 0.19 +1.3 41,803 + Atu3045 0.19 +1.4 41,811 - Atu3045 0.22 +1.9 42,108 - +0.0 42,108 - +1.7 42,261 + +3.7 42,380 - Atu3046 0.17 +0.8 42,406 - Atu3046 0.19 +0.8 42,446 + Atu3046 0.22 +1.2 42,454 - Atu3046 0.23 +0.5 42,508 + Atu3046 0.27 +2.5 42,529 + Atu3046 0.29 +0.3 42,650 - Atu3046 0.38 -0.5 42,724 + Atu3046 0.43 +0.8 42,724 + Atu3046 0.43 +1.1 42,732 - Atu3046 0.44 +0.8 42,745 + Atu3046 0.45 +1.2 42,765 + Atu3046 0.46 +0.1 42,770 + Atu3046 0.47 -0.3 42,784 + Atu3046 0.48 +0.9 42,794 + Atu3046 0.49 +0.3 42,807 - Atu3046 0.50 -0.6 42,816 + Atu3046 0.50 +6.7 42,921 + Atu3046 0.58 +0.3 42,989 + Atu3046 0.63 -0.9 42,997 - Atu3046 0.64 +0.3 43,032 - Atu3046 0.67 +1.4 43,066 + Atu3046 0.69 +1.0 43,068 + Atu3046 0.69 +0.2 43,068 + Atu3046 0.69 +0.4 43,074 - Atu3046 0.70 -0.7
Or see this region's nucleotide sequence