Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0989 and Atu0990 are separated by 21 nucleotides Atu0990 and Atu0991 are separated by 181 nucleotides Atu0991 and Atu0992 are separated by 34 nucleotides Atu0992 and Atu0993 are separated by 61 nucleotides
Atu0989: Atu0989 - hypothetical protein, at 984,866 to 985,771
Atu0989
Atu0990: Atu0990 - NAD/NADP dependent oxidoreductase, at 985,793 to 986,581
Atu0990
Atu0991: Atu0991 - cation efflux system component, at 986,763 to 987,683
Atu0991
Atu0992: Atu0992 - permease, at 987,718 to 988,587
Atu0992
Atu0993: Atu0993 - transcriptional regulator, TetR family, at 988,649 to 989,275
Atu0993
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.922 kb on + strand, within Atu0990 at 985.949 kb on + strand, within Atu0990 at 986.007 kb on + strand, within Atu0990 at 986.015 kb on - strand, within Atu0990 at 986.032 kb on + strand, within Atu0990 at 986.032 kb on + strand, within Atu0990 at 986.040 kb on - strand, within Atu0990 at 986.040 kb on - strand, within Atu0990 at 986.062 kb on - strand, within Atu0990 at 986.067 kb on - strand, within Atu0990 at 986.069 kb on - strand, within Atu0990 at 986.073 kb on + strand, within Atu0990 at 986.081 kb on - strand, within Atu0990 at 986.106 kb on + strand, within Atu0990 at 986.114 kb on - strand, within Atu0990 at 986.151 kb on - strand, within Atu0990 at 986.198 kb on - strand, within Atu0990 at 986.213 kb on - strand, within Atu0990 at 986.314 kb on + strand, within Atu0990 at 986.348 kb on + strand, within Atu0990 at 986.400 kb on - strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.521 kb on + strand at 986.521 kb on + strand at 986.521 kb on + strand at 986.521 kb on + strand at 986.529 kb on - strand at 986.529 kb on - strand at 986.529 kb on - strand at 986.594 kb on + strand at 986.767 kb on - strand at 986.809 kb on + strand at 986.832 kb on - strand at 986.953 kb on + strand, within Atu0991 at 986.957 kb on - strand, within Atu0991 at 987.033 kb on + strand, within Atu0991 at 987.033 kb on + strand, within Atu0991 at 987.035 kb on + strand, within Atu0991 at 987.041 kb on - strand, within Atu0991 at 987.043 kb on - strand, within Atu0991 at 987.043 kb on - strand, within Atu0991 at 987.069 kb on + strand, within Atu0991 at 987.072 kb on + strand, within Atu0991 at 987.161 kb on + strand, within Atu0991 at 987.227 kb on - strand, within Atu0991 at 987.243 kb on + strand, within Atu0991 at 987.243 kb on + strand, within Atu0991 at 987.251 kb on - strand, within Atu0991 at 987.268 kb on - strand, within Atu0991 at 987.288 kb on - strand, within Atu0991 at 987.355 kb on - strand, within Atu0991 at 987.374 kb on + strand, within Atu0991 at 987.426 kb on - strand, within Atu0991 at 987.489 kb on + strand, within Atu0991 at 987.571 kb on + strand, within Atu0991 at 987.572 kb on - strand, within Atu0991 at 987.671 kb on - strand at 987.703 kb on + strand at 987.711 kb on - strand at 987.713 kb on + strand at 987.725 kb on + strand at 987.725 kb on + strand at 987.733 kb on - strand at 987.793 kb on - strand at 987.840 kb on - strand, within Atu0992 at 987.842 kb on + strand, within Atu0992 at 987.885 kb on - strand, within Atu0992 at 987.905 kb on + strand, within Atu0992 at 987.923 kb on - strand, within Atu0992 at 987.933 kb on - strand, within Atu0992 at 988.024 kb on + strand, within Atu0992 at 988.092 kb on + strand, within Atu0992 at 988.117 kb on - strand, within Atu0992 at 988.136 kb on + strand, within Atu0992 at 988.155 kb on - strand, within Atu0992 at 988.226 kb on - strand, within Atu0992 at 988.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 985,922 + Atu0990 0.16 +0.7 985,949 + Atu0990 0.20 -0.5 986,007 + Atu0990 0.27 -1.2 986,015 - Atu0990 0.28 +0.6 986,032 + Atu0990 0.30 -1.1 986,032 + Atu0990 0.30 +0.9 986,040 - Atu0990 0.31 -1.1 986,040 - Atu0990 0.31 -0.0 986,062 - Atu0990 0.34 +0.2 986,067 - Atu0990 0.35 -0.4 986,069 - Atu0990 0.35 -0.4 986,073 + Atu0990 0.35 +1.1 986,081 - Atu0990 0.37 +0.3 986,106 + Atu0990 0.40 +1.1 986,114 - Atu0990 0.41 -2.1 986,151 - Atu0990 0.45 -0.5 986,198 - Atu0990 0.51 +0.8 986,213 - Atu0990 0.53 -0.6 986,314 + Atu0990 0.66 +1.6 986,348 + Atu0990 0.70 +1.1 986,400 - Atu0990 0.77 +1.1 986,406 + Atu0990 0.78 +1.9 986,406 + Atu0990 0.78 -0.8 986,406 + Atu0990 0.78 +0.0 986,406 + Atu0990 0.78 -0.5 986,406 + Atu0990 0.78 -1.1 986,414 - Atu0990 0.79 +0.2 986,414 - Atu0990 0.79 +0.3 986,414 - Atu0990 0.79 +2.3 986,414 - Atu0990 0.79 -0.4 986,414 - Atu0990 0.79 -0.1 986,414 - Atu0990 0.79 +0.6 986,414 - Atu0990 0.79 -0.1 986,521 + +0.0 986,521 + +0.7 986,521 + -0.6 986,521 + -0.1 986,529 - -0.2 986,529 - -3.4 986,529 - +1.1 986,594 + +1.1 986,767 - +0.7 986,809 + -1.3 986,832 - +1.3 986,953 + Atu0991 0.21 -0.2 986,957 - Atu0991 0.21 +2.7 987,033 + Atu0991 0.29 -0.3 987,033 + Atu0991 0.29 -0.2 987,035 + Atu0991 0.30 -0.0 987,041 - Atu0991 0.30 -0.1 987,043 - Atu0991 0.30 +1.0 987,043 - Atu0991 0.30 -0.5 987,069 + Atu0991 0.33 -1.4 987,072 + Atu0991 0.34 +1.8 987,161 + Atu0991 0.43 -0.8 987,227 - Atu0991 0.50 +0.8 987,243 + Atu0991 0.52 +0.1 987,243 + Atu0991 0.52 +0.7 987,251 - Atu0991 0.53 +0.6 987,268 - Atu0991 0.55 -0.4 987,288 - Atu0991 0.57 +0.6 987,355 - Atu0991 0.64 -2.0 987,374 + Atu0991 0.66 +1.0 987,426 - Atu0991 0.72 +0.6 987,489 + Atu0991 0.79 -0.5 987,571 + Atu0991 0.88 +1.4 987,572 - Atu0991 0.88 -0.8 987,671 - -2.2 987,703 + -2.2 987,711 - +0.2 987,713 + -0.3 987,725 + -1.2 987,725 + -0.4 987,733 - +0.0 987,793 - +1.1 987,840 - Atu0992 0.14 -0.8 987,842 + Atu0992 0.14 -0.4 987,885 - Atu0992 0.19 +1.1 987,905 + Atu0992 0.21 -0.4 987,923 - Atu0992 0.24 +1.4 987,933 - Atu0992 0.25 -0.3 988,024 + Atu0992 0.35 -0.7 988,092 + Atu0992 0.43 +0.2 988,117 - Atu0992 0.46 +0.1 988,136 + Atu0992 0.48 +0.9 988,155 - Atu0992 0.50 +0.2 988,226 - Atu0992 0.58 -2.4 988,525 - -0.3
Or see this region's nucleotide sequence