Strain Fitness in Agrobacterium fabrum C58 around Atu0311

Experiment: Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0310 and Atu0311 are separated by 183 nucleotidesAtu0311 and Atu0312 are separated by 112 nucleotides Atu0310: Atu0310 - glutathione synthetase, at 302,305 to 303,264 Atu0310 Atu0311: Atu0311 - hypothetical protein, at 303,448 to 304,980 Atu0311 Atu0312: Atu0312 - cysteine synthase, at 305,093 to 306,061 Atu0312 Position (kb) 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 303.255 kb on + strandat 303.449 kb on + strandat 303.452 kb on - strandat 303.459 kb on + strandat 303.459 kb on + strandat 303.459 kb on + strandat 303.459 kb on + strandat 303.459 kb on + strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.467 kb on - strandat 303.505 kb on + strandat 303.513 kb on - strandat 303.588 kb on + strandat 303.592 kb on - strandat 303.596 kb on - strandat 303.598 kb on + strandat 303.608 kb on + strand, within Atu0311at 303.608 kb on + strand, within Atu0311at 303.608 kb on + strand, within Atu0311at 303.613 kb on + strand, within Atu0311at 303.621 kb on - strand, within Atu0311at 303.718 kb on + strand, within Atu0311at 303.726 kb on - strand, within Atu0311at 303.806 kb on - strand, within Atu0311at 303.846 kb on + strand, within Atu0311at 303.847 kb on + strand, within Atu0311at 303.847 kb on + strand, within Atu0311at 303.855 kb on - strand, within Atu0311at 303.855 kb on - strand, within Atu0311at 303.855 kb on - strand, within Atu0311at 303.855 kb on - strand, within Atu0311at 303.855 kb on - strand, within Atu0311at 303.916 kb on - strand, within Atu0311at 303.967 kb on - strand, within Atu0311at 303.979 kb on + strand, within Atu0311at 303.984 kb on - strand, within Atu0311at 304.038 kb on - strand, within Atu0311at 304.084 kb on - strand, within Atu0311at 304.129 kb on + strand, within Atu0311at 304.139 kb on + strand, within Atu0311at 304.202 kb on - strand, within Atu0311at 304.233 kb on + strand, within Atu0311at 304.242 kb on + strand, within Atu0311at 304.250 kb on - strand, within Atu0311at 304.252 kb on + strand, within Atu0311at 304.308 kb on + strand, within Atu0311at 304.317 kb on - strand, within Atu0311at 304.382 kb on - strand, within Atu0311at 304.408 kb on + strand, within Atu0311at 304.483 kb on - strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.521 kb on - strand, within Atu0311at 304.521 kb on - strand, within Atu0311at 304.523 kb on + strand, within Atu0311at 304.632 kb on + strand, within Atu0311at 304.632 kb on + strand, within Atu0311at 304.649 kb on - strand, within Atu0311at 304.654 kb on - strand, within Atu0311at 304.691 kb on + strand, within Atu0311at 304.699 kb on - strand, within Atu0311at 304.699 kb on - strand, within Atu0311at 304.702 kb on + strand, within Atu0311at 304.765 kb on - strand, within Atu0311at 304.902 kb on + strandat 304.995 kb on + strandat 305.061 kb on - strandat 305.068 kb on + strandat 305.074 kb on - strandat 305.223 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.265 kb on - strand, within Atu0312at 305.335 kb on - strand, within Atu0312at 305.341 kb on + strand, within Atu0312at 305.349 kb on - strand, within Atu0312at 305.360 kb on + strand, within Atu0312at 305.368 kb on - strand, within Atu0312at 305.443 kb on - strand, within Atu0312at 305.510 kb on + strand, within Atu0312at 305.510 kb on + strand, within Atu0312at 305.564 kb on - strand, within Atu0312at 305.610 kb on + strand, within Atu0312at 305.630 kb on - strand, within Atu0312at 305.689 kb on + strand, within Atu0312at 305.694 kb on + strand, within Atu0312at 305.697 kb on - strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.914 kb on + strand, within Atu0312

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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303,255 + -0.1
303,449 + +0.5
303,452 - -0.9
303,459 + -1.2
303,459 + -0.6
303,459 + +4.7
303,459 + -0.7
303,459 + -0.5
303,467 - -0.3
303,467 - +0.9
303,467 - +0.0
303,467 - +0.2
303,467 - +0.4
303,467 - -0.5
303,467 - -0.3
303,467 - -2.0
303,467 - +0.1
303,467 - -0.1
303,467 - +1.3
303,505 + -0.7
303,513 - +2.1
303,588 + -2.1
303,592 - +0.0
303,596 - +1.0
303,598 + +0.0
303,608 + Atu0311 0.10 +0.3
303,608 + Atu0311 0.10 +0.3
303,608 + Atu0311 0.10 +0.0
303,613 + Atu0311 0.11 +0.2
303,621 - Atu0311 0.11 +0.3
303,718 + Atu0311 0.18 -0.4
303,726 - Atu0311 0.18 -0.1
303,806 - Atu0311 0.23 +0.7
303,846 + Atu0311 0.26 +1.5
303,847 + Atu0311 0.26 -1.6
303,847 + Atu0311 0.26 -0.4
303,855 - Atu0311 0.27 +0.2
303,855 - Atu0311 0.27 -0.1
303,855 - Atu0311 0.27 +0.3
303,855 - Atu0311 0.27 +1.0
303,855 - Atu0311 0.27 +1.8
303,916 - Atu0311 0.31 -0.8
303,967 - Atu0311 0.34 -2.2
303,979 + Atu0311 0.35 +0.3
303,984 - Atu0311 0.35 -0.6
304,038 - Atu0311 0.38 -0.5
304,084 - Atu0311 0.41 -1.3
304,129 + Atu0311 0.44 -1.4
304,139 + Atu0311 0.45 -2.2
304,202 - Atu0311 0.49 -1.2
304,233 + Atu0311 0.51 -0.0
304,242 + Atu0311 0.52 +0.5
304,250 - Atu0311 0.52 -1.6
304,252 + Atu0311 0.52 +0.6
304,308 + Atu0311 0.56 +0.3
304,317 - Atu0311 0.57 -0.6
304,382 - Atu0311 0.61 +1.0
304,408 + Atu0311 0.63 -1.0
304,483 - Atu0311 0.68 -2.5
304,513 + Atu0311 0.69 -0.2
304,513 + Atu0311 0.69 +0.1
304,513 + Atu0311 0.69 +2.8
304,521 - Atu0311 0.70 +0.1
304,521 - Atu0311 0.70 -1.1
304,523 + Atu0311 0.70 +0.8
304,632 + Atu0311 0.77 +0.5
304,632 + Atu0311 0.77 -2.0
304,649 - Atu0311 0.78 +0.8
304,654 - Atu0311 0.79 +1.5
304,691 + Atu0311 0.81 -0.6
304,699 - Atu0311 0.82 +0.9
304,699 - Atu0311 0.82 -1.3
304,702 + Atu0311 0.82 +0.5
304,765 - Atu0311 0.86 +0.1
304,902 + +0.3
304,995 + +0.1
305,061 - -1.3
305,068 + -1.5
305,074 - +0.4
305,223 + Atu0312 0.13 +2.2
305,247 + Atu0312 0.16 +0.5
305,247 + Atu0312 0.16 +0.2
305,247 + Atu0312 0.16 +0.2
305,247 + Atu0312 0.16 -0.4
305,247 + Atu0312 0.16 -0.5
305,255 - Atu0312 0.17 +0.3
305,255 - Atu0312 0.17 -0.1
305,255 - Atu0312 0.17 -0.2
305,265 - Atu0312 0.18 -0.0
305,335 - Atu0312 0.25 -0.1
305,341 + Atu0312 0.26 +0.2
305,349 - Atu0312 0.26 -1.4
305,360 + Atu0312 0.28 -0.0
305,368 - Atu0312 0.28 -0.3
305,443 - Atu0312 0.36 -0.0
305,510 + Atu0312 0.43 +2.1
305,510 + Atu0312 0.43 -1.5
305,564 - Atu0312 0.49 -1.8
305,610 + Atu0312 0.53 +0.4
305,630 - Atu0312 0.55 -1.6
305,689 + Atu0312 0.62 +0.3
305,694 + Atu0312 0.62 -0.7
305,697 - Atu0312 0.62 -0.2
305,847 + Atu0312 0.78 +0.3
305,847 + Atu0312 0.78 -1.6
305,847 + Atu0312 0.78 +0.5
305,847 + Atu0312 0.78 +1.6
305,855 - Atu0312 0.79 +0.2
305,855 - Atu0312 0.79 +1.1
305,855 - Atu0312 0.79 -0.6
305,914 + Atu0312 0.85 -0.6

Or see this region's nucleotide sequence