Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3440 and Atu3441 are separated by 16 nucleotides Atu3441 and Atu3442 are separated by 55 nucleotides
Atu3440: Atu3440 - LysR family transcriptional regulator, at 487,044 to 488,015
Atu3440
Atu3441: Atu3441 - nitrilotriacetate monooxygenase, at 488,032 to 489,384
Atu3441
Atu3442: Atu3442 - oligopeptide ABC transporter substrate-binding protein, at 489,440 to 491,035
Atu3442
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.048 kb on + strand at 487.130 kb on + strand at 487.310 kb on - strand, within Atu3440 at 487.382 kb on + strand, within Atu3440 at 487.433 kb on - strand, within Atu3440 at 487.440 kb on - strand, within Atu3440 at 487.446 kb on + strand, within Atu3440 at 487.600 kb on - strand, within Atu3440 at 487.600 kb on - strand, within Atu3440 at 487.609 kb on - strand, within Atu3440 at 487.669 kb on + strand, within Atu3440 at 487.712 kb on - strand, within Atu3440 at 487.712 kb on - strand, within Atu3440 at 487.803 kb on + strand, within Atu3440 at 487.856 kb on + strand, within Atu3440 at 487.891 kb on + strand, within Atu3440 at 487.899 kb on - strand, within Atu3440 at 487.899 kb on - strand, within Atu3440 at 487.920 kb on + strand at 487.923 kb on - strand at 487.938 kb on - strand at 487.986 kb on + strand at 488.027 kb on - strand at 488.116 kb on + strand at 488.285 kb on + strand, within Atu3441 at 488.325 kb on - strand, within Atu3441 at 488.423 kb on + strand, within Atu3441 at 488.433 kb on + strand, within Atu3441 at 488.433 kb on + strand, within Atu3441 at 488.452 kb on - strand, within Atu3441 at 488.475 kb on + strand, within Atu3441 at 488.581 kb on + strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.737 kb on + strand, within Atu3441 at 488.772 kb on + strand, within Atu3441 at 488.781 kb on - strand, within Atu3441 at 488.791 kb on - strand, within Atu3441 at 488.888 kb on - strand, within Atu3441 at 488.967 kb on - strand, within Atu3441 at 488.974 kb on - strand, within Atu3441 at 488.999 kb on - strand, within Atu3441 at 489.010 kb on + strand, within Atu3441 at 489.018 kb on - strand, within Atu3441 at 489.018 kb on - strand, within Atu3441 at 489.060 kb on + strand, within Atu3441 at 489.060 kb on - strand, within Atu3441 at 489.065 kb on + strand, within Atu3441 at 489.083 kb on - strand, within Atu3441 at 489.083 kb on - strand, within Atu3441 at 489.176 kb on + strand, within Atu3441 at 489.293 kb on + strand at 489.293 kb on + strand at 489.353 kb on + strand at 489.358 kb on + strand at 489.379 kb on + strand at 489.396 kb on - strand at 489.438 kb on + strand at 489.509 kb on - strand at 489.532 kb on - strand at 489.767 kb on - strand, within Atu3442 at 489.913 kb on + strand, within Atu3442 at 489.921 kb on - strand, within Atu3442 at 489.932 kb on - strand, within Atu3442 at 490.045 kb on + strand, within Atu3442 at 490.152 kb on - strand, within Atu3442 at 490.153 kb on + strand, within Atu3442 at 490.161 kb on - strand, within Atu3442 at 490.220 kb on + strand, within Atu3442 at 490.230 kb on - strand, within Atu3442 at 490.245 kb on + strand, within Atu3442 at 490.253 kb on - strand, within Atu3442 at 490.288 kb on - strand, within Atu3442 at 490.290 kb on + strand, within Atu3442 at 490.307 kb on + strand, within Atu3442 at 490.365 kb on + strand, within Atu3442 at 490.373 kb on - strand, within Atu3442
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 487,048 + +0.3 487,130 + -1.1 487,310 - Atu3440 0.27 +1.5 487,382 + Atu3440 0.35 -0.1 487,433 - Atu3440 0.40 -0.7 487,440 - Atu3440 0.41 +1.6 487,446 + Atu3440 0.41 -0.3 487,600 - Atu3440 0.57 +0.5 487,600 - Atu3440 0.57 -1.2 487,609 - Atu3440 0.58 +1.8 487,669 + Atu3440 0.64 -0.5 487,712 - Atu3440 0.69 -0.2 487,712 - Atu3440 0.69 +0.1 487,803 + Atu3440 0.78 +0.0 487,856 + Atu3440 0.84 -0.0 487,891 + Atu3440 0.87 -0.7 487,899 - Atu3440 0.88 +0.1 487,899 - Atu3440 0.88 -0.2 487,920 + -1.8 487,923 - -0.8 487,938 - -2.1 487,986 + +0.8 488,027 - +0.5 488,116 + +0.7 488,285 + Atu3441 0.19 +0.6 488,325 - Atu3441 0.22 -0.3 488,423 + Atu3441 0.29 -1.6 488,433 + Atu3441 0.30 -0.1 488,433 + Atu3441 0.30 -0.8 488,452 - Atu3441 0.31 -0.2 488,475 + Atu3441 0.33 -0.3 488,581 + Atu3441 0.41 +0.3 488,726 - Atu3441 0.51 -0.4 488,726 - Atu3441 0.51 -0.0 488,737 + Atu3441 0.52 -1.0 488,772 + Atu3441 0.55 -0.8 488,781 - Atu3441 0.55 -0.5 488,791 - Atu3441 0.56 -0.2 488,888 - Atu3441 0.63 -0.2 488,967 - Atu3441 0.69 -0.7 488,974 - Atu3441 0.70 -0.7 488,999 - Atu3441 0.71 -1.0 489,010 + Atu3441 0.72 -1.4 489,018 - Atu3441 0.73 +0.2 489,018 - Atu3441 0.73 -0.4 489,060 + Atu3441 0.76 +0.7 489,060 - Atu3441 0.76 -1.4 489,065 + Atu3441 0.76 +0.0 489,083 - Atu3441 0.78 +1.1 489,083 - Atu3441 0.78 -0.3 489,176 + Atu3441 0.85 -2.2 489,293 + -0.1 489,293 + -0.5 489,353 + +0.2 489,358 + +0.8 489,379 + +0.3 489,396 - +0.2 489,438 + +0.0 489,509 - -0.1 489,532 - -0.4 489,767 - Atu3442 0.20 +1.7 489,913 + Atu3442 0.30 -1.1 489,921 - Atu3442 0.30 +0.7 489,932 - Atu3442 0.31 +0.3 490,045 + Atu3442 0.38 +0.0 490,152 - Atu3442 0.45 +0.3 490,153 + Atu3442 0.45 -1.7 490,161 - Atu3442 0.45 -1.0 490,220 + Atu3442 0.49 -1.3 490,230 - Atu3442 0.49 +0.3 490,245 + Atu3442 0.50 -0.1 490,253 - Atu3442 0.51 -0.3 490,288 - Atu3442 0.53 +0.0 490,290 + Atu3442 0.53 -0.8 490,307 + Atu3442 0.54 -0.2 490,365 + Atu3442 0.58 -0.9 490,373 - Atu3442 0.58 +0.5
Or see this region's nucleotide sequence