Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3428 and Atu3429 are separated by 201 nucleotides Atu3429 and Atu3430 overlap by 4 nucleotides Atu3430 and Atu3431 are separated by 57 nucleotides
Atu3428: Atu3428 - hypothetical protein, at 474,470 to 475,087
Atu3428
Atu3429: Atu3429 - hypothetical protein, at 475,289 to 475,477
Atu3429
Atu3430: Atu3430 - alkanesulfonate monooxygenase, at 475,474 to 476,544
Atu3430
Atu3431: Atu3431 - acyl-CoA dehydrogenase, at 476,602 to 477,780
Atu3431
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2 at 474.489 kb on + strand at 474.537 kb on - strand, within Atu3428 at 474.572 kb on + strand, within Atu3428 at 474.628 kb on + strand, within Atu3428 at 474.724 kb on + strand, within Atu3428 at 474.777 kb on + strand, within Atu3428 at 474.792 kb on + strand, within Atu3428 at 474.816 kb on + strand, within Atu3428 at 474.834 kb on + strand, within Atu3428 at 474.880 kb on - strand, within Atu3428 at 474.946 kb on + strand, within Atu3428 at 475.053 kb on - strand at 475.063 kb on - strand at 475.063 kb on - strand at 475.088 kb on - strand at 475.092 kb on + strand at 475.433 kb on + strand, within Atu3429 at 475.471 kb on + strand at 475.515 kb on + strand at 475.621 kb on + strand, within Atu3430 at 475.653 kb on - strand, within Atu3430 at 475.664 kb on + strand, within Atu3430 at 475.683 kb on + strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.857 kb on + strand, within Atu3430 at 475.859 kb on - strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.931 kb on - strand, within Atu3430 at 475.960 kb on + strand, within Atu3430 at 476.043 kb on - strand, within Atu3430 at 476.073 kb on - strand, within Atu3430 at 476.211 kb on - strand, within Atu3430 at 476.348 kb on - strand, within Atu3430 at 476.664 kb on - strand at 476.813 kb on - strand, within Atu3431 at 476.839 kb on + strand, within Atu3431 at 476.895 kb on + strand, within Atu3431 at 476.903 kb on - strand, within Atu3431 at 476.919 kb on + strand, within Atu3431 at 476.924 kb on + strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.937 kb on + strand, within Atu3431 at 476.944 kb on + strand, within Atu3431 at 476.952 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.019 kb on + strand, within Atu3431 at 477.408 kb on - strand, within Atu3431 at 477.431 kb on + strand, within Atu3431 at 477.440 kb on - strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.499 kb on - strand, within Atu3431 at 477.511 kb on - strand, within Atu3431
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 474,489 + +0.3 474,537 - Atu3428 0.11 -1.6 474,572 + Atu3428 0.17 +1.4 474,628 + Atu3428 0.26 +0.4 474,724 + Atu3428 0.41 +0.6 474,777 + Atu3428 0.50 -1.4 474,792 + Atu3428 0.52 -0.4 474,816 + Atu3428 0.56 -1.0 474,834 + Atu3428 0.59 +0.5 474,880 - Atu3428 0.66 -0.2 474,946 + Atu3428 0.77 -0.4 475,053 - +1.0 475,063 - -0.9 475,063 - +0.7 475,088 - +1.0 475,092 + -1.9 475,433 + Atu3429 0.76 -0.2 475,471 + +0.4 475,515 + -1.0 475,621 + Atu3430 0.14 -0.6 475,653 - Atu3430 0.17 -0.6 475,664 + Atu3430 0.18 -0.8 475,683 + Atu3430 0.20 +0.1 475,732 - Atu3430 0.24 -0.6 475,732 - Atu3430 0.24 +0.4 475,857 + Atu3430 0.36 -0.3 475,859 - Atu3430 0.36 +2.3 475,899 + Atu3430 0.40 +0.3 475,899 + Atu3430 0.40 -0.2 475,899 + Atu3430 0.40 -0.1 475,907 - Atu3430 0.40 +0.9 475,907 - Atu3430 0.40 -0.1 475,907 - Atu3430 0.40 +0.5 475,907 - Atu3430 0.40 -1.5 475,931 - Atu3430 0.43 +0.8 475,960 + Atu3430 0.45 -0.4 476,043 - Atu3430 0.53 +0.7 476,073 - Atu3430 0.56 +0.0 476,211 - Atu3430 0.69 -0.1 476,348 - Atu3430 0.82 +2.7 476,664 - -0.1 476,813 - Atu3431 0.18 +0.5 476,839 + Atu3431 0.20 +0.2 476,895 + Atu3431 0.25 +0.8 476,903 - Atu3431 0.26 -1.1 476,919 + Atu3431 0.27 +0.4 476,924 + Atu3431 0.27 +1.0 476,927 - Atu3431 0.28 +0.1 476,927 - Atu3431 0.28 +0.6 476,937 + Atu3431 0.28 -1.3 476,944 + Atu3431 0.29 -0.1 476,952 + Atu3431 0.30 -1.2 476,997 + Atu3431 0.34 -0.4 476,997 + Atu3431 0.34 -0.2 477,005 - Atu3431 0.34 +0.5 477,005 - Atu3431 0.34 +0.4 477,019 + Atu3431 0.35 -1.1 477,408 - Atu3431 0.68 -0.5 477,431 + Atu3431 0.70 -0.3 477,440 - Atu3431 0.71 +1.0 477,491 + Atu3431 0.75 -0.7 477,491 + Atu3431 0.75 +0.7 477,499 - Atu3431 0.76 +0.7 477,511 - Atu3431 0.77 -0.4
Or see this region's nucleotide sequence