Strain Fitness in Agrobacterium fabrum C58 around Atu3223

Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3222 and Atu3223 are separated by 69 nucleotidesAtu3223 and Atu3224 overlap by 4 nucleotides Atu3222: Atu3222 - ribose ABC transporter substrate-binding protein, at 235,845 to 236,804 Atu3222 Atu3223: Atu3223 - ribose ABC transporter ATPase, at 236,874 to 238,397 Atu3223 Atu3224: Atu3224 - ribose ABC transporter permease, at 238,394 to 239,440 Atu3224 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 235.889 kb on - strandat 235.960 kb on + strand, within Atu3222at 235.965 kb on + strand, within Atu3222at 236.013 kb on - strand, within Atu3222at 236.068 kb on + strand, within Atu3222at 236.097 kb on - strand, within Atu3222at 236.102 kb on - strand, within Atu3222at 236.267 kb on + strand, within Atu3222at 236.371 kb on - strand, within Atu3222at 236.399 kb on + strand, within Atu3222at 236.575 kb on - strand, within Atu3222at 236.603 kb on + strand, within Atu3222at 236.611 kb on - strand, within Atu3222at 236.682 kb on + strand, within Atu3222at 236.682 kb on + strand, within Atu3222at 236.734 kb on + strandat 236.795 kb on + strandat 236.832 kb on - strandat 236.832 kb on - strandat 236.876 kb on + strandat 236.937 kb on + strandat 236.945 kb on - strandat 237.037 kb on + strand, within Atu3223at 237.045 kb on - strand, within Atu3223at 237.065 kb on - strand, within Atu3223at 237.149 kb on - strand, within Atu3223at 237.242 kb on + strand, within Atu3223at 237.419 kb on + strand, within Atu3223at 237.488 kb on + strand, within Atu3223at 237.496 kb on - strand, within Atu3223at 237.509 kb on + strand, within Atu3223at 237.521 kb on + strand, within Atu3223at 237.563 kb on + strand, within Atu3223at 237.568 kb on + strand, within Atu3223at 237.570 kb on + strand, within Atu3223at 237.571 kb on - strand, within Atu3223at 237.578 kb on - strand, within Atu3223at 237.603 kb on + strand, within Atu3223at 237.686 kb on - strand, within Atu3223at 237.692 kb on + strand, within Atu3223at 237.714 kb on - strand, within Atu3223at 237.799 kb on - strand, within Atu3223at 237.821 kb on + strand, within Atu3223at 237.829 kb on - strand, within Atu3223at 237.892 kb on + strand, within Atu3223at 237.900 kb on - strand, within Atu3223at 237.900 kb on - strand, within Atu3223at 237.960 kb on + strand, within Atu3223at 237.968 kb on - strand, within Atu3223at 237.968 kb on - strand, within Atu3223at 237.977 kb on - strand, within Atu3223at 238.134 kb on - strand, within Atu3223at 238.222 kb on - strand, within Atu3223at 238.263 kb on + strandat 238.338 kb on - strandat 238.433 kb on + strandat 238.567 kb on + strand, within Atu3224at 238.779 kb on + strand, within Atu3224at 238.790 kb on + strand, within Atu3224at 238.817 kb on + strand, within Atu3224at 238.817 kb on + strand, within Atu3224at 238.843 kb on - strand, within Atu3224at 238.844 kb on - strand, within Atu3224at 238.936 kb on + strand, within Atu3224at 238.952 kb on - strand, within Atu3224at 238.954 kb on - strand, within Atu3224at 238.964 kb on - strand, within Atu3224at 239.044 kb on + strand, within Atu3224at 239.088 kb on + strand, within Atu3224at 239.100 kb on - strand, within Atu3224at 239.133 kb on - strand, within Atu3224at 239.194 kb on - strand, within Atu3224at 239.229 kb on - strand, within Atu3224at 239.246 kb on - strand, within Atu3224at 239.307 kb on - strand, within Atu3224at 239.333 kb on - strand, within Atu3224at 239.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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235,889 - -0.4
235,960 + Atu3222 0.12 -0.1
235,965 + Atu3222 0.12 -1.0
236,013 - Atu3222 0.17 -2.2
236,068 + Atu3222 0.23 +0.2
236,097 - Atu3222 0.26 +0.1
236,102 - Atu3222 0.27 +0.1
236,267 + Atu3222 0.44 +0.2
236,371 - Atu3222 0.55 -0.2
236,399 + Atu3222 0.58 +2.4
236,575 - Atu3222 0.76 -0.5
236,603 + Atu3222 0.79 -1.4
236,611 - Atu3222 0.80 -1.8
236,682 + Atu3222 0.87 -2.4
236,682 + Atu3222 0.87 +0.0
236,734 + +0.3
236,795 + +0.4
236,832 - +0.5
236,832 - -1.7
236,876 + +0.8
236,937 + -2.0
236,945 - -0.2
237,037 + Atu3223 0.11 -1.8
237,045 - Atu3223 0.11 +0.1
237,065 - Atu3223 0.13 -1.2
237,149 - Atu3223 0.18 +0.5
237,242 + Atu3223 0.24 -2.5
237,419 + Atu3223 0.36 -0.1
237,488 + Atu3223 0.40 -1.2
237,496 - Atu3223 0.41 -1.6
237,509 + Atu3223 0.42 -0.4
237,521 + Atu3223 0.42 +0.4
237,563 + Atu3223 0.45 +0.9
237,568 + Atu3223 0.46 +0.9
237,570 + Atu3223 0.46 +0.2
237,571 - Atu3223 0.46 -0.1
237,578 - Atu3223 0.46 -1.4
237,603 + Atu3223 0.48 +1.8
237,686 - Atu3223 0.53 -1.0
237,692 + Atu3223 0.54 -1.1
237,714 - Atu3223 0.55 +0.7
237,799 - Atu3223 0.61 -0.6
237,821 + Atu3223 0.62 -1.8
237,829 - Atu3223 0.63 +0.3
237,892 + Atu3223 0.67 +0.2
237,900 - Atu3223 0.67 +0.3
237,900 - Atu3223 0.67 -0.1
237,960 + Atu3223 0.71 +0.1
237,968 - Atu3223 0.72 +0.4
237,968 - Atu3223 0.72 +0.0
237,977 - Atu3223 0.72 -1.0
238,134 - Atu3223 0.83 -1.0
238,222 - Atu3223 0.88 -1.6
238,263 + -0.8
238,338 - +0.1
238,433 + -0.8
238,567 + Atu3224 0.17 +0.2
238,779 + Atu3224 0.37 -1.4
238,790 + Atu3224 0.38 -0.2
238,817 + Atu3224 0.40 +0.3
238,817 + Atu3224 0.40 +0.6
238,843 - Atu3224 0.43 +1.0
238,844 - Atu3224 0.43 +0.2
238,936 + Atu3224 0.52 +0.4
238,952 - Atu3224 0.53 -0.6
238,954 - Atu3224 0.53 -0.9
238,964 - Atu3224 0.54 +0.4
239,044 + Atu3224 0.62 -0.1
239,088 + Atu3224 0.66 +0.9
239,100 - Atu3224 0.67 +1.4
239,133 - Atu3224 0.71 +1.0
239,194 - Atu3224 0.76 -0.9
239,229 - Atu3224 0.80 -1.2
239,246 - Atu3224 0.81 -0.5
239,307 - Atu3224 0.87 +0.3
239,333 - Atu3224 0.90 +0.9
239,368 + +0.1

Or see this region's nucleotide sequence