Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0203 and Atu0204 are separated by 142 nucleotides Atu0204 and Atu0205 are separated by 223 nucleotides
Atu0203: Atu0203 - hypothetical protein, at 207,198 to 208,115
Atu0203
Atu0204: Atu0204 - hypothetical protein, at 208,258 to 209,361
Atu0204
Atu0205: Atu0205 - methylmalonate-semialdehyde dehydrogenase, at 209,585 to 211,141
Atu0205
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 207.265 kb on + strand at 207.273 kb on - strand at 207.275 kb on + strand at 207.380 kb on + strand, within Atu0203 at 207.387 kb on + strand, within Atu0203 at 207.395 kb on - strand, within Atu0203 at 207.497 kb on + strand, within Atu0203 at 207.503 kb on + strand, within Atu0203 at 207.710 kb on + strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.910 kb on - strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.122 kb on + strand at 208.194 kb on - strand at 208.210 kb on + strand at 208.211 kb on + strand at 208.220 kb on - strand at 208.220 kb on - strand at 208.339 kb on - strand at 208.343 kb on - strand at 208.354 kb on - strand at 208.411 kb on + strand, within Atu0204 at 208.414 kb on - strand, within Atu0204 at 208.553 kb on + strand, within Atu0204 at 208.553 kb on + strand, within Atu0204 at 208.565 kb on + strand, within Atu0204 at 208.623 kb on + strand, within Atu0204 at 208.660 kb on + strand, within Atu0204 at 208.691 kb on + strand, within Atu0204 at 208.742 kb on + strand, within Atu0204 at 208.750 kb on - strand, within Atu0204 at 208.766 kb on + strand, within Atu0204 at 208.771 kb on + strand, within Atu0204 at 208.779 kb on - strand, within Atu0204 at 208.806 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.847 kb on + strand, within Atu0204 at 208.855 kb on - strand, within Atu0204 at 208.855 kb on - strand, within Atu0204 at 208.892 kb on + strand, within Atu0204 at 208.905 kb on + strand, within Atu0204 at 208.984 kb on + strand, within Atu0204 at 209.029 kb on - strand, within Atu0204 at 209.062 kb on + strand, within Atu0204 at 209.192 kb on - strand, within Atu0204 at 209.216 kb on + strand, within Atu0204 at 209.216 kb on + strand, within Atu0204 at 209.216 kb on + strand, within Atu0204 at 209.216 kb on + strand, within Atu0204 at 209.271 kb on - strand at 209.342 kb on + strand at 209.350 kb on + strand at 209.429 kb on - strand at 209.637 kb on - strand at 209.718 kb on - strand at 209.719 kb on + strand at 209.719 kb on - strand at 209.839 kb on - strand, within Atu0205 at 209.920 kb on - strand, within Atu0205 at 210.053 kb on + strand, within Atu0205 at 210.084 kb on - strand, within Atu0205 at 210.097 kb on - strand, within Atu0205 at 210.097 kb on - strand, within Atu0205 at 210.126 kb on + strand, within Atu0205 at 210.265 kb on - strand, within Atu0205 at 210.265 kb on - strand, within Atu0205 at 210.265 kb on - strand, within Atu0205 at 210.292 kb on + strand, within Atu0205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 207,265 + -2.6 207,273 - -0.6 207,275 + +1.5 207,380 + Atu0203 0.20 -0.4 207,387 + Atu0203 0.21 +0.4 207,395 - Atu0203 0.21 +0.4 207,497 + Atu0203 0.33 +0.3 207,503 + Atu0203 0.33 +0.4 207,710 + Atu0203 0.56 +0.8 207,834 - Atu0203 0.69 -0.2 207,834 - Atu0203 0.69 +0.3 207,910 - Atu0203 0.78 -0.3 208,004 + Atu0203 0.88 -0.3 208,004 + Atu0203 0.88 -2.3 208,004 + Atu0203 0.88 -2.2 208,004 + Atu0203 0.88 -2.0 208,004 + Atu0203 0.88 -2.2 208,004 + Atu0203 0.88 +0.8 208,004 + Atu0203 0.88 +0.9 208,004 + Atu0203 0.88 +0.6 208,004 + Atu0203 0.88 -2.1 208,004 + Atu0203 0.88 -0.1 208,004 + Atu0203 0.88 -0.2 208,012 - Atu0203 0.89 -0.9 208,012 - Atu0203 0.89 -0.3 208,012 - Atu0203 0.89 -0.3 208,012 - Atu0203 0.89 +0.1 208,012 - Atu0203 0.89 -0.4 208,012 - Atu0203 0.89 -0.2 208,012 - Atu0203 0.89 +1.2 208,012 - Atu0203 0.89 +0.1 208,012 - Atu0203 0.89 +0.0 208,012 - Atu0203 0.89 +0.7 208,012 - Atu0203 0.89 +0.3 208,012 - Atu0203 0.89 -0.4 208,012 - Atu0203 0.89 -0.7 208,012 - Atu0203 0.89 -0.2 208,012 - Atu0203 0.89 -0.1 208,012 - Atu0203 0.89 +0.1 208,012 - Atu0203 0.89 +0.1 208,012 - Atu0203 0.89 +0.4 208,122 + -0.4 208,194 - +1.1 208,210 + +0.5 208,211 + +0.2 208,220 - -0.0 208,220 - +0.1 208,339 - -0.5 208,343 - +0.0 208,354 - -1.7 208,411 + Atu0204 0.14 -0.1 208,414 - Atu0204 0.14 -0.2 208,553 + Atu0204 0.27 -0.2 208,553 + Atu0204 0.27 +0.4 208,565 + Atu0204 0.28 -0.3 208,623 + Atu0204 0.33 -0.2 208,660 + Atu0204 0.36 -0.0 208,691 + Atu0204 0.39 +0.1 208,742 + Atu0204 0.44 +0.4 208,750 - Atu0204 0.45 +0.3 208,766 + Atu0204 0.46 -2.4 208,771 + Atu0204 0.46 +0.3 208,779 - Atu0204 0.47 +1.8 208,806 - Atu0204 0.50 +0.8 208,834 - Atu0204 0.52 +6.4 208,834 - Atu0204 0.52 +0.8 208,834 - Atu0204 0.52 -1.6 208,847 + Atu0204 0.53 +0.7 208,855 - Atu0204 0.54 +0.1 208,855 - Atu0204 0.54 -0.5 208,892 + Atu0204 0.57 -0.1 208,905 + Atu0204 0.59 -1.6 208,984 + Atu0204 0.66 -0.1 209,029 - Atu0204 0.70 +0.8 209,062 + Atu0204 0.73 -0.5 209,192 - Atu0204 0.85 -0.1 209,216 + Atu0204 0.87 -0.6 209,216 + Atu0204 0.87 +0.6 209,216 + Atu0204 0.87 -0.0 209,216 + Atu0204 0.87 -0.4 209,271 - -1.0 209,342 + +0.7 209,350 + +0.6 209,429 - +0.2 209,637 - +0.1 209,718 - -1.0 209,719 + +0.1 209,719 - +0.8 209,839 - Atu0205 0.16 +0.6 209,920 - Atu0205 0.22 -2.0 210,053 + Atu0205 0.30 -0.5 210,084 - Atu0205 0.32 +0.6 210,097 - Atu0205 0.33 +0.2 210,097 - Atu0205 0.33 -0.6 210,126 + Atu0205 0.35 -2.2 210,265 - Atu0205 0.44 -1.7 210,265 - Atu0205 0.44 -1.0 210,265 - Atu0205 0.44 -0.5 210,292 + Atu0205 0.45 -0.8
Or see this region's nucleotide sequence