Strain Fitness in Agrobacterium fabrum C58 around Atu6186

Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6185 and Atu6186 are separated by 69 nucleotidesAtu6186 and Atu6188 are separated by 451 nucleotidesAtu6188 and Atu6189 are separated by 115 nucleotides Atu6185: Atu6185 - virA/G regulated protein, at 202,074 to 204,596 Atu6185 Atu6186: Atu6186 - virA/G regulated protein, at 204,666 to 205,232 Atu6186 Atu6188: Atu6188 - virA/G regulated protein, at 205,684 to 205,935 Atu6188 Atu6189: Atu6189 - protein secretion chaperone, at 206,051 to 206,242 Atu6189 Position (kb) 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 203.699 kb on + strand, within Atu6185at 203.729 kb on + strand, within Atu6185at 203.732 kb on - strand, within Atu6185at 203.740 kb on - strand, within Atu6185at 203.934 kb on - strand, within Atu6185at 203.971 kb on - strand, within Atu6185at 203.977 kb on + strand, within Atu6185at 203.978 kb on + strand, within Atu6185at 203.981 kb on - strand, within Atu6185at 203.981 kb on - strand, within Atu6185at 203.985 kb on - strand, within Atu6185at 203.987 kb on + strand, within Atu6185at 204.008 kb on - strand, within Atu6185at 204.009 kb on - strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.052 kb on - strand, within Atu6185at 204.057 kb on - strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.078 kb on - strand, within Atu6185at 204.107 kb on + strand, within Atu6185at 204.160 kb on + strand, within Atu6185at 204.199 kb on + strand, within Atu6185at 204.219 kb on - strand, within Atu6185at 204.238 kb on + strand, within Atu6185at 204.246 kb on - strand, within Atu6185at 204.258 kb on + strand, within Atu6185at 204.260 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.266 kb on - strand, within Atu6185at 204.268 kb on - strand, within Atu6185at 204.273 kb on - strand, within Atu6185at 204.273 kb on - strand, within Atu6185at 204.274 kb on - strand, within Atu6185at 204.290 kb on + strand, within Atu6185at 204.447 kb on + strandat 204.457 kb on - strandat 204.513 kb on + strandat 204.516 kb on + strandat 204.523 kb on + strandat 204.548 kb on + strandat 204.556 kb on - strandat 204.617 kb on - strandat 204.647 kb on + strandat 204.729 kb on + strand, within Atu6186at 204.739 kb on + strand, within Atu6186at 204.832 kb on - strand, within Atu6186at 204.896 kb on - strand, within Atu6186at 204.912 kb on - strand, within Atu6186at 205.097 kb on + strand, within Atu6186at 205.136 kb on + strand, within Atu6186at 205.170 kb on - strand, within Atu6186at 205.209 kb on - strandat 205.227 kb on - strandat 205.245 kb on - strandat 205.250 kb on - strandat 205.257 kb on - strandat 205.273 kb on - strandat 205.290 kb on - strandat 205.308 kb on - strandat 205.355 kb on + strandat 205.355 kb on + strandat 205.363 kb on - strandat 205.365 kb on - strandat 205.379 kb on + strandat 205.388 kb on - strandat 205.402 kb on - strandat 205.403 kb on + strandat 205.403 kb on + strandat 205.421 kb on - strandat 205.428 kb on + strandat 205.689 kb on - strandat 205.689 kb on - strandat 205.712 kb on + strand, within Atu6188at 205.719 kb on - strand, within Atu6188at 205.760 kb on + strand, within Atu6188at 205.765 kb on + strand, within Atu6188at 205.787 kb on - strand, within Atu6188at 205.866 kb on + strand, within Atu6188at 205.872 kb on + strand, within Atu6188at 205.877 kb on + strand, within Atu6188at 205.885 kb on - strand, within Atu6188at 205.887 kb on + strand, within Atu6188at 205.890 kb on - strand, within Atu6188at 205.895 kb on - strand, within Atu6188at 205.900 kb on - strand, within Atu6188at 205.901 kb on + strand, within Atu6188at 205.902 kb on + strand, within Atu6188at 205.907 kb on + strand, within Atu6188at 205.908 kb on - strand, within Atu6188at 205.917 kb on + strandat 205.944 kb on - strandat 205.981 kb on + strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.991 kb on + strandat 205.999 kb on - strandat 206.000 kb on - strandat 206.080 kb on + strand, within Atu6189at 206.204 kb on - strand, within Atu6189

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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203,699 + Atu6185 0.64 -3.7
203,729 + Atu6185 0.66 +0.3
203,732 - Atu6185 0.66 -1.2
203,740 - Atu6185 0.66 -0.2
203,934 - Atu6185 0.74 +0.1
203,971 - Atu6185 0.75 +0.6
203,977 + Atu6185 0.75 +0.8
203,978 + Atu6185 0.75 +1.0
203,981 - Atu6185 0.76 +0.5
203,981 - Atu6185 0.76 -1.1
203,985 - Atu6185 0.76 -0.9
203,987 + Atu6185 0.76 -0.5
204,008 - Atu6185 0.77 -3.2
204,009 - Atu6185 0.77 -0.8
204,027 + Atu6185 0.77 -2.7
204,027 + Atu6185 0.77 -0.0
204,027 + Atu6185 0.77 +5.8
204,027 + Atu6185 0.77 +0.1
204,027 + Atu6185 0.77 -1.1
204,027 + Atu6185 0.77 -0.3
204,027 + Atu6185 0.77 -2.7
204,027 + Atu6185 0.77 +0.9
204,027 + Atu6185 0.77 -0.5
204,035 - Atu6185 0.78 -0.9
204,035 - Atu6185 0.78 -0.1
204,035 - Atu6185 0.78 +1.3
204,035 - Atu6185 0.78 +1.7
204,052 - Atu6185 0.78 -2.5
204,057 - Atu6185 0.79 -4.2
204,070 + Atu6185 0.79 -0.5
204,070 + Atu6185 0.79 +0.8
204,070 + Atu6185 0.79 -0.9
204,078 - Atu6185 0.79 +2.9
204,107 + Atu6185 0.81 -1.2
204,160 + Atu6185 0.83 -0.1
204,199 + Atu6185 0.84 +2.1
204,219 - Atu6185 0.85 +0.4
204,238 + Atu6185 0.86 -1.9
204,246 - Atu6185 0.86 -0.1
204,258 + Atu6185 0.87 +0.1
204,260 + Atu6185 0.87 -1.5
204,265 + Atu6185 0.87 -1.6
204,265 + Atu6185 0.87 -0.7
204,265 + Atu6185 0.87 -1.9
204,265 + Atu6185 0.87 -0.5
204,266 - Atu6185 0.87 +0.3
204,268 - Atu6185 0.87 +1.3
204,273 - Atu6185 0.87 -0.4
204,273 - Atu6185 0.87 +1.2
204,274 - Atu6185 0.87 +0.3
204,290 + Atu6185 0.88 +0.0
204,447 + -0.4
204,457 - -0.2
204,513 + -3.8
204,516 + +0.4
204,523 + -1.4
204,548 + +0.9
204,556 - -1.6
204,617 - +0.2
204,647 + -3.7
204,729 + Atu6186 0.11 -0.1
204,739 + Atu6186 0.13 -1.1
204,832 - Atu6186 0.29 +0.2
204,896 - Atu6186 0.41 +0.9
204,912 - Atu6186 0.43 +1.3
205,097 + Atu6186 0.76 +0.6
205,136 + Atu6186 0.83 +1.2
205,170 - Atu6186 0.89 +3.2
205,209 - +0.4
205,227 - -1.5
205,245 - +2.2
205,250 - +0.3
205,257 - -2.0
205,273 - +1.6
205,290 - -1.5
205,308 - +0.4
205,355 + +0.7
205,355 + -0.6
205,363 - -3.2
205,365 - +1.8
205,379 + -1.4
205,388 - -1.1
205,402 - -2.3
205,403 + -0.6
205,403 + -2.9
205,421 - -0.9
205,428 + -3.8
205,689 - +0.8
205,689 - +1.7
205,712 + Atu6188 0.11 +0.6
205,719 - Atu6188 0.14 +0.7
205,760 + Atu6188 0.30 +1.0
205,765 + Atu6188 0.32 +0.2
205,787 - Atu6188 0.41 -1.2
205,866 + Atu6188 0.72 -3.5
205,872 + Atu6188 0.75 +0.5
205,877 + Atu6188 0.77 -3.2
205,885 - Atu6188 0.80 +0.2
205,887 + Atu6188 0.81 +1.5
205,890 - Atu6188 0.82 +0.4
205,895 - Atu6188 0.84 +0.7
205,900 - Atu6188 0.86 -3.3
205,901 + Atu6188 0.86 -1.7
205,902 + Atu6188 0.87 -3.2
205,907 + Atu6188 0.88 +0.7
205,908 - Atu6188 0.89 -0.1
205,917 + +1.5
205,944 - -0.7
205,981 + -2.8
205,989 - +1.9
205,989 - +0.6
205,989 - +1.5
205,989 - -3.3
205,991 + -0.5
205,999 - -4.3
206,000 - +2.6
206,080 + Atu6189 0.15 -1.4
206,204 - Atu6189 0.80 -0.2

Or see this region's nucleotide sequence