Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5454 and Atu5455 are separated by 23 nucleotides Atu5455 and Atu5456 are separated by 47 nucleotides Atu5456 and Atu5457 are separated by 115 nucleotides
Atu5454: Atu5454 - hypothetical protein, at 446,601 to 447,665
Atu5454
Atu5455: Atu5455 - hypothetical protein, at 447,689 to 448,336
Atu5455
Atu5456: Atu5456 - hypothetical protein, at 448,384 to 449,295
Atu5456
Atu5457: Atu5457 - dihydrodipicolinate synthase, at 449,411 to 450,319
Atu5457
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 447.488 kb on - strand, within Atu5454 at 447.501 kb on - strand, within Atu5454 at 447.569 kb on + strand at 447.603 kb on - strand at 447.692 kb on - strand at 447.702 kb on - strand at 447.730 kb on - strand at 447.732 kb on + strand at 447.732 kb on + strand at 447.778 kb on + strand, within Atu5455 at 447.830 kb on - strand, within Atu5455 at 447.852 kb on - strand, within Atu5455 at 447.944 kb on - strand, within Atu5455 at 447.959 kb on + strand, within Atu5455 at 447.967 kb on - strand, within Atu5455 at 447.976 kb on - strand, within Atu5455 at 448.011 kb on - strand, within Atu5455 at 448.013 kb on - strand, within Atu5455 at 448.055 kb on + strand, within Atu5455 at 448.197 kb on + strand, within Atu5455 at 448.374 kb on - strand at 448.399 kb on + strand at 448.514 kb on + strand, within Atu5456 at 448.550 kb on + strand, within Atu5456 at 448.550 kb on + strand, within Atu5456 at 448.551 kb on - strand, within Atu5456 at 448.584 kb on + strand, within Atu5456 at 448.599 kb on - strand, within Atu5456 at 448.670 kb on + strand, within Atu5456 at 448.680 kb on + strand, within Atu5456 at 448.680 kb on + strand, within Atu5456 at 448.680 kb on + strand, within Atu5456 at 448.697 kb on + strand, within Atu5456 at 448.734 kb on + strand, within Atu5456 at 448.742 kb on - strand, within Atu5456 at 448.742 kb on - strand, within Atu5456 at 448.742 kb on - strand, within Atu5456 at 448.830 kb on - strand, within Atu5456 at 448.868 kb on + strand, within Atu5456 at 448.920 kb on - strand, within Atu5456 at 448.954 kb on - strand, within Atu5456 at 448.956 kb on - strand, within Atu5456 at 448.974 kb on + strand, within Atu5456 at 449.006 kb on + strand, within Atu5456 at 449.084 kb on + strand, within Atu5456 at 449.138 kb on + strand, within Atu5456 at 449.138 kb on + strand, within Atu5456 at 449.143 kb on + strand, within Atu5456 at 449.143 kb on + strand, within Atu5456 at 449.148 kb on + strand, within Atu5456 at 449.148 kb on + strand, within Atu5456 at 449.151 kb on - strand, within Atu5456 at 449.151 kb on - strand, within Atu5456 at 449.153 kb on + strand, within Atu5456 at 449.161 kb on - strand, within Atu5456 at 449.436 kb on + strand at 449.439 kb on - strand at 449.439 kb on - strand at 449.444 kb on - strand at 449.495 kb on - strand at 449.515 kb on + strand, within Atu5457 at 449.522 kb on + strand, within Atu5457 at 449.530 kb on - strand, within Atu5457 at 449.652 kb on - strand, within Atu5457 at 449.672 kb on - strand, within Atu5457 at 449.682 kb on - strand, within Atu5457 at 449.754 kb on + strand, within Atu5457 at 449.754 kb on + strand, within Atu5457 at 449.754 kb on + strand, within Atu5457 at 449.762 kb on - strand, within Atu5457 at 449.826 kb on + strand, within Atu5457 at 449.826 kb on + strand, within Atu5457 at 449.834 kb on - strand, within Atu5457 at 449.834 kb on - strand, within Atu5457 at 449.841 kb on + strand, within Atu5457 at 449.841 kb on + strand, within Atu5457 at 450.052 kb on + strand, within Atu5457 at 450.122 kb on + strand, within Atu5457 at 450.214 kb on - strand, within Atu5457
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 447,488 - Atu5454 0.83 -0.8 447,501 - Atu5454 0.85 +0.9 447,569 + +4.6 447,603 - -2.4 447,692 - +0.2 447,702 - +3.6 447,730 - +1.0 447,732 + +1.0 447,732 + -0.7 447,778 + Atu5455 0.14 -1.2 447,830 - Atu5455 0.22 +1.3 447,852 - Atu5455 0.25 +2.4 447,944 - Atu5455 0.39 +0.2 447,959 + Atu5455 0.42 +0.5 447,967 - Atu5455 0.43 +0.4 447,976 - Atu5455 0.44 -3.5 448,011 - Atu5455 0.50 +1.2 448,013 - Atu5455 0.50 -0.7 448,055 + Atu5455 0.56 +1.5 448,197 + Atu5455 0.78 +1.7 448,374 - +0.3 448,399 + -1.6 448,514 + Atu5456 0.14 -2.8 448,550 + Atu5456 0.18 +0.8 448,550 + Atu5456 0.18 -1.1 448,551 - Atu5456 0.18 -0.9 448,584 + Atu5456 0.22 -1.2 448,599 - Atu5456 0.24 +2.3 448,670 + Atu5456 0.31 -0.3 448,680 + Atu5456 0.32 -3.5 448,680 + Atu5456 0.32 +0.5 448,680 + Atu5456 0.32 +3.3 448,697 + Atu5456 0.34 +0.7 448,734 + Atu5456 0.38 +1.7 448,742 - Atu5456 0.39 +1.0 448,742 - Atu5456 0.39 +0.1 448,742 - Atu5456 0.39 -0.6 448,830 - Atu5456 0.49 -2.3 448,868 + Atu5456 0.53 -1.7 448,920 - Atu5456 0.59 -1.9 448,954 - Atu5456 0.62 -1.8 448,956 - Atu5456 0.63 -1.0 448,974 + Atu5456 0.65 -1.0 449,006 + Atu5456 0.68 -3.3 449,084 + Atu5456 0.77 -1.0 449,138 + Atu5456 0.83 -0.4 449,138 + Atu5456 0.83 +0.7 449,143 + Atu5456 0.83 -1.3 449,143 + Atu5456 0.83 +1.2 449,148 + Atu5456 0.84 -0.4 449,148 + Atu5456 0.84 -2.1 449,151 - Atu5456 0.84 -0.3 449,151 - Atu5456 0.84 +0.0 449,153 + Atu5456 0.84 -0.9 449,161 - Atu5456 0.85 -0.3 449,436 + -0.9 449,439 - -1.8 449,439 - -0.1 449,444 - +1.8 449,495 - +0.5 449,515 + Atu5457 0.11 -2.9 449,522 + Atu5457 0.12 -0.1 449,530 - Atu5457 0.13 -2.1 449,652 - Atu5457 0.27 +0.9 449,672 - Atu5457 0.29 +0.4 449,682 - Atu5457 0.30 +4.5 449,754 + Atu5457 0.38 -3.0 449,754 + Atu5457 0.38 +0.4 449,754 + Atu5457 0.38 -2.0 449,762 - Atu5457 0.39 +1.5 449,826 + Atu5457 0.46 -0.4 449,826 + Atu5457 0.46 +1.0 449,834 - Atu5457 0.47 +0.9 449,834 - Atu5457 0.47 +1.6 449,841 + Atu5457 0.47 -2.7 449,841 + Atu5457 0.47 -2.3 450,052 + Atu5457 0.71 +0.6 450,122 + Atu5457 0.78 -1.3 450,214 - Atu5457 0.88 +1.8
Or see this region's nucleotide sequence