Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5407 and Atu5408 are separated by 103 nucleotides Atu5408 and Atu5409 are separated by 3 nucleotides Atu5409 and Atu5410 are separated by 627 nucleotides
Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772
Atu5407
Atu5408: Atu5408 - ABC transporter membrane spanning protein (amino acid), at 402,876 to 403,730
Atu5408
Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669
Atu5409
Atu5410: Atu5410 - ABC transporter nucleotide binding/ATPase, at 405,297 to 406,412
Atu5410
Position (kb) 403
404
405 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 402.803 kb on - strand at 402.856 kb on + strand at 402.864 kb on - strand at 402.925 kb on + strand at 402.930 kb on + strand at 402.990 kb on - strand, within Atu5408 at 402.990 kb on - strand, within Atu5408 at 403.026 kb on - strand, within Atu5408 at 403.132 kb on + strand, within Atu5408 at 403.159 kb on + strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.177 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.202 kb on + strand, within Atu5408 at 403.260 kb on + strand, within Atu5408 at 403.413 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.454 kb on - strand, within Atu5408 at 403.558 kb on + strand, within Atu5408 at 403.622 kb on - strand, within Atu5408 at 403.668 kb on + strand at 403.668 kb on + strand at 403.675 kb on + strand at 403.675 kb on - strand at 403.676 kb on - strand at 403.731 kb on + strand at 403.740 kb on - strand at 403.784 kb on + strand at 403.798 kb on - strand at 403.838 kb on - strand, within Atu5409 at 403.842 kb on + strand, within Atu5409 at 403.850 kb on - strand, within Atu5409 at 403.882 kb on - strand, within Atu5409 at 403.932 kb on + strand, within Atu5409 at 404.006 kb on - strand, within Atu5409 at 404.086 kb on + strand, within Atu5409 at 404.094 kb on - strand, within Atu5409 at 404.129 kb on - strand, within Atu5409 at 404.173 kb on - strand, within Atu5409 at 404.250 kb on - strand, within Atu5409 at 404.302 kb on + strand, within Atu5409 at 404.315 kb on - strand, within Atu5409 at 404.317 kb on + strand, within Atu5409 at 404.323 kb on - strand, within Atu5409 at 404.347 kb on - strand, within Atu5409 at 404.372 kb on + strand, within Atu5409 at 404.373 kb on + strand, within Atu5409 at 404.380 kb on - strand, within Atu5409 at 404.382 kb on + strand, within Atu5409 at 404.426 kb on - strand, within Atu5409 at 404.536 kb on + strand, within Atu5409 at 404.583 kb on + strand at 404.601 kb on - strand at 404.769 kb on - strand at 404.769 kb on - strand at 404.890 kb on - strand at 405.179 kb on + strand at 405.181 kb on + strand at 405.189 kb on + strand at 405.256 kb on - strand at 405.264 kb on - strand at 405.268 kb on - strand at 405.270 kb on + strand at 405.425 kb on + strand, within Atu5410 at 405.433 kb on - strand, within Atu5410 at 405.474 kb on + strand, within Atu5410 at 405.496 kb on + strand, within Atu5410 at 405.506 kb on + strand, within Atu5410 at 405.521 kb on - strand, within Atu5410 at 405.539 kb on - strand, within Atu5410 at 405.590 kb on - strand, within Atu5410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 402,803 - +0.5 402,856 + +0.2 402,864 - -0.3 402,925 + -3.4 402,930 + -0.9 402,990 - Atu5408 0.13 -0.8 402,990 - Atu5408 0.13 +4.2 403,026 - Atu5408 0.18 -1.3 403,132 + Atu5408 0.30 +0.6 403,159 + Atu5408 0.33 -0.3 403,167 - Atu5408 0.34 -0.3 403,167 - Atu5408 0.34 -1.4 403,167 - Atu5408 0.34 -0.5 403,176 - Atu5408 0.35 -0.1 403,176 - Atu5408 0.35 -0.9 403,177 - Atu5408 0.35 -1.8 403,200 - Atu5408 0.38 +0.3 403,200 - Atu5408 0.38 -0.0 403,202 + Atu5408 0.38 +1.1 403,260 + Atu5408 0.45 -2.5 403,413 + Atu5408 0.63 -2.5 403,446 + Atu5408 0.67 +0.8 403,446 + Atu5408 0.67 +0.0 403,454 - Atu5408 0.68 +1.0 403,558 + Atu5408 0.80 -1.5 403,622 - Atu5408 0.87 +0.9 403,668 + -2.3 403,668 + +0.9 403,675 + +0.8 403,675 - +1.2 403,676 - +0.1 403,731 + -1.5 403,740 - -0.8 403,784 + -3.1 403,798 - -0.2 403,838 - Atu5409 0.11 +1.6 403,842 + Atu5409 0.12 -2.3 403,850 - Atu5409 0.12 +2.9 403,882 - Atu5409 0.16 +0.3 403,932 + Atu5409 0.21 -0.3 404,006 - Atu5409 0.29 +0.9 404,086 + Atu5409 0.38 +0.9 404,094 - Atu5409 0.38 -1.9 404,129 - Atu5409 0.42 -1.6 404,173 - Atu5409 0.47 -3.9 404,250 - Atu5409 0.55 -1.7 404,302 + Atu5409 0.61 +1.1 404,315 - Atu5409 0.62 -0.1 404,317 + Atu5409 0.62 +0.9 404,323 - Atu5409 0.63 -0.1 404,347 - Atu5409 0.65 -2.1 404,372 + Atu5409 0.68 -0.4 404,373 + Atu5409 0.68 +0.5 404,380 - Atu5409 0.69 -0.1 404,382 + Atu5409 0.69 -0.2 404,426 - Atu5409 0.74 -1.7 404,536 + Atu5409 0.86 +1.2 404,583 + +0.7 404,601 - -4.2 404,769 - -0.2 404,769 - +0.7 404,890 - +0.8 405,179 + -3.6 405,181 + -3.0 405,189 + +0.1 405,256 - +2.7 405,264 - -1.8 405,268 - +2.2 405,270 + -2.3 405,425 + Atu5410 0.11 +0.4 405,433 - Atu5410 0.12 +0.2 405,474 + Atu5410 0.16 +0.7 405,496 + Atu5410 0.18 -2.6 405,506 + Atu5410 0.19 +0.3 405,521 - Atu5410 0.20 -0.9 405,539 - Atu5410 0.22 +0.4 405,590 - Atu5410 0.26 -1.9
Or see this region's nucleotide sequence