Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5167 and Atu5168 are separated by 35 nucleotides Atu5168 and Atu5169 are separated by 3 nucleotides Atu5169 and Atu5170 overlap by 1 nucleotides
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378
Atu5168
Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053
Atu5169
Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904
Atu5170
Position (kb) 166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand at 165.253 kb on + strand, within Atu5167 at 165.272 kb on + strand, within Atu5167 at 165.273 kb on + strand, within Atu5167 at 165.323 kb on - strand, within Atu5167 at 165.482 kb on - strand, within Atu5167 at 165.498 kb on + strand, within Atu5167 at 165.714 kb on - strand, within Atu5167 at 165.755 kb on + strand, within Atu5167 at 165.876 kb on + strand, within Atu5167 at 165.941 kb on + strand, within Atu5167 at 165.986 kb on + strand at 165.986 kb on + strand at 165.994 kb on - strand at 166.006 kb on - strand at 166.114 kb on + strand at 166.179 kb on - strand, within Atu5168 at 166.438 kb on + strand at 166.446 kb on - strand at 166.455 kb on - strand, within Atu5169 at 166.501 kb on - strand, within Atu5169 at 166.514 kb on + strand, within Atu5169 at 166.554 kb on - strand, within Atu5169 at 166.555 kb on + strand, within Atu5169 at 166.691 kb on + strand, within Atu5169 at 166.704 kb on - strand, within Atu5169 at 166.782 kb on - strand, within Atu5169 at 166.832 kb on + strand, within Atu5169 at 166.983 kb on - strand, within Atu5169 at 167.041 kb on - strand at 167.041 kb on - strand at 167.144 kb on + strand, within Atu5170 at 167.178 kb on - strand, within Atu5170 at 167.371 kb on - strand, within Atu5170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 165,122 + -0.4 165,150 + -0.3 165,173 + +0.4 165,253 + Atu5167 0.12 -3.9 165,272 + Atu5167 0.14 -1.3 165,273 + Atu5167 0.14 -1.4 165,323 - Atu5167 0.19 -3.0 165,482 - Atu5167 0.36 -0.5 165,498 + Atu5167 0.38 -0.2 165,714 - Atu5167 0.61 +0.3 165,755 + Atu5167 0.66 -0.9 165,876 + Atu5167 0.79 -1.3 165,941 + Atu5167 0.85 -1.9 165,986 + +1.1 165,986 + -0.5 165,994 - -2.0 166,006 - -0.3 166,114 + -1.6 166,179 - Atu5168 0.25 -2.7 166,438 + +0.3 166,446 - -0.4 166,455 - Atu5169 0.11 +0.0 166,501 - Atu5169 0.18 +0.2 166,514 + Atu5169 0.20 -0.2 166,554 - Atu5169 0.26 +1.6 166,555 + Atu5169 0.26 +2.9 166,691 + Atu5169 0.46 +1.3 166,704 - Atu5169 0.48 -1.8 166,782 - Atu5169 0.60 -0.7 166,832 + Atu5169 0.67 +2.3 166,983 - Atu5169 0.89 -0.0 167,041 - -0.3 167,041 - -0.0 167,144 + Atu5170 0.11 +2.3 167,178 - Atu5170 0.15 -3.2 167,371 - Atu5170 0.37 -3.8
Or see this region's nucleotide sequence