Strain Fitness in Agrobacterium fabrum C58 around Atu5040

Experiment: Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5039 and Atu5040 are separated by 73 nucleotidesAtu5040 and Atu5041 overlap by 4 nucleotidesAtu5041 and Atu5042 overlap by 4 nucleotides Atu5039: Atu5039 - hypothetical protein, at 39,240 to 40,421 Atu5039 Atu5040: Atu5040 - hypothetical protein, at 40,495 to 41,397 Atu5040 Atu5041: Atu5041 - plasmid partitioning protein, at 41,394 to 42,281 Atu5041 Atu5042: Atu5042 - recombinase, at 42,278 to 43,795 Atu5042 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 39.594 kb on - strand, within Atu5039at 39.600 kb on + strand, within Atu5039at 39.607 kb on + strand, within Atu5039at 39.607 kb on + strand, within Atu5039at 39.615 kb on - strand, within Atu5039at 39.650 kb on - strand, within Atu5039at 39.657 kb on + strand, within Atu5039at 39.665 kb on - strand, within Atu5039at 39.669 kb on + strand, within Atu5039at 39.669 kb on + strand, within Atu5039at 39.671 kb on + strand, within Atu5039at 39.677 kb on - strand, within Atu5039at 39.677 kb on - strand, within Atu5039at 39.677 kb on - strand, within Atu5039at 39.679 kb on - strand, within Atu5039at 39.679 kb on - strand, within Atu5039at 39.679 kb on - strand, within Atu5039at 39.690 kb on - strand, within Atu5039at 39.698 kb on + strand, within Atu5039at 39.851 kb on + strand, within Atu5039at 39.851 kb on + strand, within Atu5039at 39.851 kb on + strand, within Atu5039at 39.859 kb on - strand, within Atu5039at 39.864 kb on - strand, within Atu5039at 39.937 kb on + strand, within Atu5039at 39.945 kb on - strand, within Atu5039at 39.977 kb on + strand, within Atu5039at 40.074 kb on - strand, within Atu5039at 40.288 kb on - strand, within Atu5039at 40.293 kb on - strand, within Atu5039at 40.318 kb on + strandat 40.329 kb on + strandat 40.432 kb on + strandat 40.448 kb on - strandat 40.457 kb on + strandat 40.457 kb on + strandat 40.457 kb on + strandat 40.457 kb on + strandat 40.464 kb on - strandat 40.465 kb on - strandat 40.465 kb on - strandat 40.465 kb on - strandat 40.465 kb on - strandat 40.490 kb on - strandat 40.518 kb on + strandat 40.533 kb on - strandat 40.568 kb on + strandat 40.671 kb on + strand, within Atu5040at 40.680 kb on + strand, within Atu5040at 40.799 kb on + strand, within Atu5040at 40.827 kb on - strand, within Atu5040at 40.841 kb on + strand, within Atu5040at 40.867 kb on - strand, within Atu5040at 40.944 kb on + strand, within Atu5040at 40.958 kb on + strand, within Atu5040at 40.966 kb on - strand, within Atu5040at 41.009 kb on + strand, within Atu5040at 41.036 kb on + strand, within Atu5040at 41.044 kb on - strand, within Atu5040at 41.070 kb on + strand, within Atu5040at 41.075 kb on + strand, within Atu5040at 41.104 kb on - strand, within Atu5040at 41.108 kb on + strand, within Atu5040at 41.116 kb on - strand, within Atu5040at 41.228 kb on - strand, within Atu5040at 41.299 kb on + strand, within Atu5040at 41.307 kb on - strandat 41.350 kb on - strandat 41.365 kb on - strandat 41.430 kb on + strandat 41.444 kb on + strandat 41.445 kb on + strandat 41.458 kb on + strandat 41.547 kb on - strand, within Atu5041at 41.548 kb on - strand, within Atu5041at 41.554 kb on + strand, within Atu5041at 41.579 kb on + strand, within Atu5041at 41.579 kb on + strand, within Atu5041at 41.579 kb on + strand, within Atu5041at 41.587 kb on - strand, within Atu5041at 41.635 kb on + strand, within Atu5041at 41.637 kb on + strand, within Atu5041at 41.637 kb on + strand, within Atu5041at 41.643 kb on - strand, within Atu5041at 41.645 kb on - strand, within Atu5041at 41.645 kb on - strand, within Atu5041at 41.747 kb on - strand, within Atu5041at 41.748 kb on - strand, within Atu5041at 41.770 kb on - strand, within Atu5041at 41.784 kb on + strand, within Atu5041at 41.838 kb on - strand, within Atu5041at 41.860 kb on - strand, within Atu5041at 41.872 kb on + strand, within Atu5041at 41.877 kb on + strand, within Atu5041at 41.885 kb on - strand, within Atu5041at 41.971 kb on + strand, within Atu5041at 41.972 kb on - strand, within Atu5041at 42.039 kb on + strand, within Atu5041at 42.083 kb on + strand, within Atu5041at 42.083 kb on + strand, within Atu5041at 42.101 kb on - strand, within Atu5041at 42.119 kb on - strand, within Atu5041at 42.154 kb on - strand, within Atu5041at 42.161 kb on + strand, within Atu5041at 42.223 kb on - strandat 42.331 kb on + strandat 42.339 kb on - strandat 42.339 kb on - strandat 42.363 kb on + strandat 42.363 kb on + strandat 42.371 kb on - strandat 42.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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39,594 - Atu5039 0.30 +0.2
39,600 + Atu5039 0.30 -1.9
39,607 + Atu5039 0.31 -0.0
39,607 + Atu5039 0.31 -1.4
39,615 - Atu5039 0.32 +1.8
39,650 - Atu5039 0.35 -1.2
39,657 + Atu5039 0.35 +0.6
39,665 - Atu5039 0.36 -1.7
39,669 + Atu5039 0.36 -3.5
39,669 + Atu5039 0.36 +1.8
39,671 + Atu5039 0.36 -3.4
39,677 - Atu5039 0.37 +2.5
39,677 - Atu5039 0.37 -2.7
39,677 - Atu5039 0.37 -1.2
39,679 - Atu5039 0.37 -1.4
39,679 - Atu5039 0.37 +0.6
39,679 - Atu5039 0.37 -2.1
39,690 - Atu5039 0.38 +0.6
39,698 + Atu5039 0.39 +1.1
39,851 + Atu5039 0.52 -0.3
39,851 + Atu5039 0.52 +0.3
39,851 + Atu5039 0.52 +0.1
39,859 - Atu5039 0.52 -1.4
39,864 - Atu5039 0.53 -0.3
39,937 + Atu5039 0.59 -3.2
39,945 - Atu5039 0.60 +1.3
39,977 + Atu5039 0.62 -0.7
40,074 - Atu5039 0.71 -0.0
40,288 - Atu5039 0.89 +1.0
40,293 - Atu5039 0.89 -0.7
40,318 + -2.2
40,329 + -3.7
40,432 + -3.6
40,448 - -0.8
40,457 + -1.3
40,457 + +1.8
40,457 + -1.0
40,457 + +0.1
40,464 - +0.6
40,465 - +0.6
40,465 - -1.0
40,465 - -0.4
40,465 - -1.8
40,490 - -0.3
40,518 + +1.5
40,533 - -3.6
40,568 + +1.1
40,671 + Atu5040 0.19 -0.0
40,680 + Atu5040 0.20 +2.5
40,799 + Atu5040 0.34 +0.4
40,827 - Atu5040 0.37 +0.6
40,841 + Atu5040 0.38 +3.3
40,867 - Atu5040 0.41 +0.9
40,944 + Atu5040 0.50 +1.4
40,958 + Atu5040 0.51 -1.7
40,966 - Atu5040 0.52 +1.2
41,009 + Atu5040 0.57 -3.1
41,036 + Atu5040 0.60 -3.6
41,044 - Atu5040 0.61 +1.4
41,070 + Atu5040 0.64 -0.4
41,075 + Atu5040 0.64 -0.2
41,104 - Atu5040 0.67 -2.2
41,108 + Atu5040 0.68 -0.3
41,116 - Atu5040 0.69 +0.1
41,228 - Atu5040 0.81 +0.4
41,299 + Atu5040 0.89 -0.0
41,307 - -0.5
41,350 - +1.6
41,365 - +0.1
41,430 + -2.6
41,444 + +1.9
41,445 + -3.8
41,458 + -1.3
41,547 - Atu5041 0.17 -1.7
41,548 - Atu5041 0.17 -0.7
41,554 + Atu5041 0.18 +0.3
41,579 + Atu5041 0.21 +0.7
41,579 + Atu5041 0.21 +0.1
41,579 + Atu5041 0.21 +1.4
41,587 - Atu5041 0.22 -3.3
41,635 + Atu5041 0.27 -0.7
41,637 + Atu5041 0.27 +0.5
41,637 + Atu5041 0.27 +0.1
41,643 - Atu5041 0.28 +1.0
41,645 - Atu5041 0.28 +0.0
41,645 - Atu5041 0.28 -2.1
41,747 - Atu5041 0.40 -0.2
41,748 - Atu5041 0.40 +0.1
41,770 - Atu5041 0.42 +0.6
41,784 + Atu5041 0.44 +1.0
41,838 - Atu5041 0.50 -1.3
41,860 - Atu5041 0.52 +1.3
41,872 + Atu5041 0.54 +0.3
41,877 + Atu5041 0.54 +1.4
41,885 - Atu5041 0.55 -0.0
41,971 + Atu5041 0.65 -0.1
41,972 - Atu5041 0.65 +1.1
42,039 + Atu5041 0.73 -2.9
42,083 + Atu5041 0.78 +0.1
42,083 + Atu5041 0.78 +1.2
42,101 - Atu5041 0.80 +1.5
42,119 - Atu5041 0.82 +0.2
42,154 - Atu5041 0.86 -0.4
42,161 + Atu5041 0.86 -2.1
42,223 - -3.0
42,331 + +2.1
42,339 - +2.4
42,339 - +1.3
42,363 + +2.5
42,363 + +0.3
42,371 - +1.3
42,378 + +0.6

Or see this region's nucleotide sequence